<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09969

Description Pre-mRNA-processing protein 40A
SequenceMASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKVSIFDILCKSS
Length959
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.084
Instability index53.51
Isoelectric point6.42
Molecular weight109577.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09969
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     539.98|      66|      66|     470|     535|       1
---------------------------------------------------------------------------
  429-  467 (35.09/17.90)	........................................EA.KNAFKS..LLE....SVNVESDWTWDQTMRVIINDKRYGAL...KT
  470-  535 (100.90/67.95)	ERKQAFNE...YLNQ.RKKFEAEEKRI.......K.Q..RKA.RDDFLA..MLEE...SKELTSSTRWSKAILMFEDDERFKAV...ER
  538-  603 (90.08/59.72)	EREDLFEN...YLVE.LHKKEKAKAAE.......E.H..KRY.VAEYRA..FLES...CDFIKASTQWRKVQERLEDDERYSRL...EK
  605-  683 (75.64/48.74)	DRLDIFQE...YIRH.LEKEEEEQKRVqkdqvrrQ.E..RKN.RDGFRK..MLEEhvaDGTLNARTRWRDYCAQIKDSQSYLAVasnTS
  686-  744 (52.02/30.78)	TPKELFDD...VIEElGKQYQEDKIQI.......K.EvvKSG.KIPMTTswTLEE............FQTATL..EDDA.LKGI...ST
  746-  810 (81.24/53.00)	NIKLVYDD...QLER.LKEKEQKDAKK.......R.Q..RLG..ENFSD..LLYS...IKEISASSTWDDSKQLFEDSQEFRAL...DS
  813-  856 (34.82/17.69)	YARELFEEcvvHLKE.RLK...EKERL.......ReE..EKAkREK.............................EREEKEKKK...EK
  857-  911 (70.20/44.60)	ERKEKERK...EKER.DHREEREKEKG.......K.D..RSR.RDE.....MEFD...GADL..NTHGAK......DKKRDKDK...EK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     262.95|      39|      39|     181|     219|       2
---------------------------------------------------------------------------
   25-   62 (31.28/11.71)	PQNL......gpP.MPMqfrpvmpS.....Q...HPPQF.....MPPAAQQ..FRPVGE...P........
   92-  133 (37.60/15.53)	PVSQgvpmvyqpA.RPM.......S.....SapmQQQQQ.....TAYAG........GH...LPTMGAPMQ
  134-  174 (45.27/20.18)	PLTY........TyQPT.......SippvaQ...PW........STGPGQSVHHVPPLV...PSG.HQPVS
  181-  219 (63.56/31.24)	PVNL........S.EPS.......S.....S...DWQEH.....TAAEGKKYYYNKKTR...QSSWEKPVE
  223-  260 (60.82/29.58)	PLER........A.D.A.......S.....T...EWKEF.....TTPEGRKYYFNKVTK...QSKWTIPDE
  264-  304 (24.41/ 7.55)	AREL........A.ENA.......S.....N...QQPDResgiaTSALVRSAAFEPSTApanQSS......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.57|      24|      26|     317|     340|       3
---------------------------------------------------------------------------
  317-  340 (40.11/27.22)	GSSNSVL...SGPPLPHNVENTSSSIV
  346-  372 (30.48/18.82)	GSSTAVVpvaASTEVPLVATDAGSSRN
  373-  390 (21.98/11.40)	NDENSSL...TTGA...DAEDGTS...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09969 with Med35 domain of Kingdom Viridiplantae
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