<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09968

Description Pre-mRNA-processing protein 40A
SequenceMASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVKPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKV
Length838
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.864
Instability index53.31
Isoelectric point5.70
Molecular weight94778.05
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09968
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     421.54|      66|      66|     467|     532|       1
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  426-  490 (78.81/49.49)	..EAKNAFKSLL.E...SVNVESDWTWDQTMRVIINDKRYGAL...KTlgER....KQAFNEYLNQRKKFEAEEKRI.......K
  491-  558 (95.55/61.60)	QRKARDDFLAMLEE...SKELTSSTRWSKAILMFEDDERFKAV...ERprER....EDLFENYLVELHKKEKAKAAE.......E
  559-  632 (85.05/54.01)	HKRYVAEYRAFLES...CDFIKASTQWRKVQERLEDDERYSRL...EK.fDR....LDIFQEYIRHLEKEEEEQKRVqkdqvrrQ
  633-  703 (73.53/45.68)	ERKNRDGFRKMLEEhvaDGTLNARTRWRDYCAQIKDSQSYLAVasnTS....gstpKELFDDVIEELGKQYQEDK..........
  767-  833 (88.60/56.57)	QRLG.ENFSDLLYS...IKEISASSTWDDSKQLFEDSQEFRAL...DSetYA....RELFEECVVHLKERLKEKERL.......R
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     130.09|      19|      19|      13|      31|       2
---------------------------------------------------------------------------
   13-   27 (26.67/ 9.64)	.......PP.....RPPMMGSSAQPQN
   28-   48 (30.62/12.20)	LGPPmpmQF.....RP.VMPSQHPPQF
   68-   88 (24.88/ 8.49)	VGMP.gqMP.....HFPQPGQHLPHSN
  128-  152 (21.59/ 6.36)	MGAP..mQPltytyQPTSIPPVAQPWS
  153-  174 (26.34/ 9.44)	TGPGqsvHH.....VPPLVPSGHQPVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.58|      38|      40|     179|     217|       3
---------------------------------------------------------------------------
  179-  217 (69.41/43.58)	LPPVKpSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVEL
  221-  258 (73.18/41.43)	LERAD.ASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.76|      26|      26|     271|     296|       4
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  271-  295 (35.51/21.25)	...QQPDRESGI.ATSALVRSAAFEPSTA
  296-  323 (31.31/17.87)	P.aNQSSSAVGIiASSAHDGSSNSVLSGP
  324-  347 (30.94/17.57)	PlpHNVENTS.....SSIVGMQNGGSSTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.38|      12|      47|      50|      63|       5
---------------------------------------------------------------------------
   50-   61 (22.34/ 6.04)	PPAAQQFRPVGE
  113-  124 (19.04/11.74)	QQQQQTAYAGGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.14|      14|      26|     383|     396|       6
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  383-  396 (23.22/14.19)	EDGTSAED.LVEAKK
  410-  424 (18.92/10.27)	EEKTSEEEpVVYATK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09968 with Med35 domain of Kingdom Viridiplantae
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