<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09967

Description Pre-mRNA-processing protein 40A
SequenceMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKV
Length824
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.859
Instability index52.60
Isoelectric point5.56
Molecular weight93316.30
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09967
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     466.43|      87|     124|     608|     694|       1
---------------------------------------------------------------------------
  412-  466 (53.14/29.60)	............EAKN....A.FKSLLE...........SVNVESDW...................TWDQTMRV...IINDkrygALKTLGerKQAFNEYLNQ.RK
  473-  535 (85.51/52.29)	KRI........KQRKAR..DD.FLAMLEE...S.....KELTSSTRWSKAILMFEDDERFKAV......ERPREredLFEN....YLVELH..K............
  536-  595 (70.05/41.46)	....KEKAKA.AEEHKRyvAE.YRAFLES..CD......FIKASTQWRKVQERLEDDERY..............................S..RLEKFDRLDIfQE
  608-  694 (144.63/93.72)	KRVQKDQVRR.QERKNR..DG.FRKMLEEHVAD.....GTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKE...LFDD....VIEELG..KQYQEDKIQI.KE
  731-  820 (113.09/71.62)	KLVYDDQLERlKEKEQK..DAkKRQRLGENFSDllysiKEISASSTWDDSKQLFEDSQEFRALDSETYA...RE...LFEE....CVVHLK..ERLKE.KERL.RE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     277.97|      39|      39|     164|     202|       2
---------------------------------------------------------------------------
    8-   42 (52.68/27.93)	.......PQNL........GPPMPM...QFRPVMPSQHPP............QFMPPAAQQ...FRPV
   44-   73 (40.56/19.63)	....................EPMAG......ANVGMPGQM............PHFPQPGQHLPHSNQV
   74-  130 (34.72/15.62)	P......PVSQgvpmvyqpARPMSSapmQQQQQTAYAGGHlptmgapmqpltYTY.....QPTSIPPV
  132-  156 (35.51/16.17)	....................QP.......W...STGPGQS............VHHVPPLVPSG.HQPV
  157-  201 (59.87/32.86)	SapttlpPVNL........SEPSSS...DWQEHTAAEGKK............YYYNKKTRQSSWEKPV
  202-  242 (54.63/29.26)	E...lmtPLER........AD.AST...EWKEFTTPEGRK............YYFNKVTKQSKWTIPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.14|      14|      26|     369|     382|       3
---------------------------------------------------------------------------
  369-  382 (23.22/15.39)	EDGTSAED.LVEAKK
  396-  410 (18.92/11.10)	EEKTSEEEpVVYATK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.76|      26|      26|     257|     282|       4
---------------------------------------------------------------------------
  257-  282 (44.61/27.24)	QQPDRESGI.ATSALVRSAAFEPSTAP
  284-  310 (40.15/23.83)	NQSSSAVGIiASSAHDGSSNSVLSGPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09967 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
2) MMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
240
1
408
189










Molecular Recognition Features






MoRF SequenceStartStop




NANANA