<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09965

Description Pre-mRNA-processing protein 40A
SequenceMASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKK
Length904
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-1.017
Instability index52.48
Isoelectric point5.90
Molecular weight102972.93
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09965
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     254.40|      28|      28|      16|      43|       1
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   16-   43 (59.54/33.03)	PPMMGSSAQ..PQNLGPPM......PMQFRPV...MPSQ
   46-   60 (28.44/11.86)	PQFMPPAAQ..................QFRPV......G
   61-   82 (38.66/18.82)	EPMAGA.......NVGMPG......QMPHFP....QPGQ
   83-  116 (33.74/15.47)	H..LPHSNQvpPVSQGVPMvyqparPMSSAPM...QQQQ
  118-  139 (31.90/14.22)	TAYAGGH.L..P.TMGAPM..........QPL...TYTY
  141-  160 (32.68/14.75)	PTSIPPVAQ..PWSTGPGQ......SV...........H
  163-  188 (29.43/12.53)	PPLVPSGHQ..PVSAPTTL......P....PVnlsEPS.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     144.75|      25|      26|     830|     854|       2
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  531-  564 (31.21/15.46)	KAVERPREREDlfenylvelHK...............KEKAKAAEEHKR
  587-  626 (31.20/15.45)	KVQERLEDDER.........YSrlekfdrldifqeyiRHLEKEEEEQKR
  830-  854 (43.61/24.85)	KEKERLREEEK.........AK...............REKEREEKEKKK
  859-  880 (38.73/21.16)	KEKER.KEKER.........DH...............RE.ERE.KEKGK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.67|      39|      39|     192|     230|       3
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  192-  230 (76.21/42.47)	WQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERAD.AS
  233-  272 (70.46/38.77)	WKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEnAS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.82|      24|      26|     276|     299|       4
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  276-  298 (33.03/20.77)	.....PDRESGI.ATSALVRSAAFEPSTA
  299-  326 (27.37/15.86)	P.anqSSSAVGIiASSAHDGSSNSVLSGP
  327-  350 (26.43/15.04)	PlphnVENTS.....SSIVGMQNGGSSTA
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     237.49|      49|      66|     414|     462|       5
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  414-  462 (75.31/46.46)	EKTSEEEPVVYAT...KMEAKNAFKSLL...........................E....S....................V.NVESDWT...WDQTMRVIIN...............DKRY
  465-  530 (40.40/21.49)	..........LKT...LGERKQAFNEYLnqrkkfeaeekrikqrkarddflamleE....S....................K.ELTSSTR...WSKAILMFED...............DERF
  640-  675 (32.17/15.60)	....................RDGFRKML...........................EehvaD....................G.TLNARTR...WRDYCAQIKD...............SQSY
  680-  755 (29.21/13.49)	SNTSGSTP............KELFDDVI...........................E....ElgkqyqedkiqikevvksgkI.PMTTSWTleeFQTATL..EDdalkgistiniklvyDDQL
  756-  805 (60.39/35.79)	ERLKEKEQKDAKKrqrLGE...NFSDLL...........................Y....S....................IkEISASST...WDDSKQLFED...............SQEF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09965 with Med35 domain of Kingdom Viridiplantae
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