<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09964

Description Pre-mRNA-processing protein 40A
SequenceMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length771
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.277
Instability index47.23
Isoelectric point5.91
Molecular weight89506.91
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09964
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     176.20|      27|      27|     610|     636|       1
---------------------------------------------------------------------------
  610-  636 (39.42/15.01)	KEKERLREEEKAK.REKEREEKEKKKEK
  639-  662 (38.54/14.50)	KEKER.KEKERDH.RE.ERE.KEKGKDR
  663-  689 (33.54/11.66)	SRRDEMEFDGADL.NTHGAKDKKRDKDK
  691-  716 (35.72/12.90)	KKHKR.RHHDTDD.VSSERDDKDDAKKS
  719-  746 (28.99/ 9.07)	HSSDRKKSRKHAHgSDSDSENRHKRHKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.29|      27|      27|      55|      81|       2
---------------------------------------------------------------------------
   53-   79 (46.41/27.01)	NQQPDRESGI.ATSALVRSAAFEPSTAP
   80-  107 (40.88/23.06)	ANQSSSAVGIiASSAHDGSSNSVLSGPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     461.38|      66|      66|     250|     315|       3
---------------------------------------------------------------------------
  194-  262 (79.97/44.12)	EKTS....EEE.PVV.......YATKmeAKNAFKSLLE....SVNVESDWTWD.....QTMRVIINDKRYGAL...KTlgERKQAFNE...YLNQ.R
  263-  330 (99.24/56.59)	KKFE....AEE.KRI.......KQRK..ARDDFLAMLEE...SKELTSSTRWS.....KAILMFEDDERFKAV...ERprEREDLFEN...YLVE.L
  331-  397 (75.94/41.51)	HKKEkakaAEEhKR..............YVAEYRAFLES...CDFIKASTQWR.....KVQERLEDDERYSRL...EK.fDRLDIFQE...YIRH.L
  398-  479 (72.50/39.28)	EKEE....EEQ.KRVqkdqvrrQERK..NRDGFRKMLEEhvaDGTLNARTRWR.....DYCAQIKDSQSYLAVasnTSgsTPKELFDD...VIEElG
  480-  538 (55.26/28.13)	KQYQ......E.DKI.......QIKE..........VVK...SGKIPMTTSWTleefqTATL..EDDA.LKGI...ST.iNIKLVYDD...QLER.L
  539-  608 (78.48/43.15)	KEKE....QKD.AKK.......RQRL..G.ENFSDLLYS...IKEISASSTWD.....DSKQLFEDSQEFRAL...DSetYARELFEEcvvHLKE.R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.40|      28|      40|     111|     141|       4
---------------------------------------------------------------------------
  111-  141 (39.30/37.86)	NVENtSSSIVG..MQNGGSSTAVVPvaASTEVP
  153-  182 (43.11/29.26)	NDEN.SSLTTGadAEDGTSAEDLVE..AKKTMP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09964 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
2) IPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
613
37
771
205










Molecular Recognition Features






MoRF SequenceStartStop




1) EDGEIY
2) HELED
3) IATSALVRSAAF
4) KKHKRRHHDTDDV
5) KKSRRH
6) LKVARELA
7) NRHKRHKKDRD
8) RKKSRKHAH
9) TEWKEFTTPEGRKYYFNKVTK
766
757
62
691
714
41
739
723
11
771
761
73
703
719
48
749
731
31