<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09964

Description Pre-mRNA-processing protein 40A
SequenceMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length771
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.277
Instability index47.23
Isoelectric point5.91
Molecular weight89506.91
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09964
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     176.20|      27|      27|     610|     636|       1
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  610-  636 (39.42/15.01)	KEKERLREEEKAK.REKEREEKEKKKEK
  639-  662 (38.54/14.50)	KEKER.KEKERDH.RE.ERE.KEKGKDR
  663-  689 (33.54/11.66)	SRRDEMEFDGADL.NTHGAKDKKRDKDK
  691-  716 (35.72/12.90)	KKHKR.RHHDTDD.VSSERDDKDDAKKS
  719-  746 (28.99/ 9.07)	HSSDRKKSRKHAHgSDSDSENRHKRHKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.29|      27|      27|      55|      81|       2
---------------------------------------------------------------------------
   53-   79 (46.41/27.01)	NQQPDRESGI.ATSALVRSAAFEPSTAP
   80-  107 (40.88/23.06)	ANQSSSAVGIiASSAHDGSSNSVLSGPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     461.38|      66|      66|     250|     315|       3
---------------------------------------------------------------------------
  194-  262 (79.97/44.12)	EKTS....EEE.PVV.......YATKmeAKNAFKSLLE....SVNVESDWTWD.....QTMRVIINDKRYGAL...KTlgERKQAFNE...YLNQ.R
  263-  330 (99.24/56.59)	KKFE....AEE.KRI.......KQRK..ARDDFLAMLEE...SKELTSSTRWS.....KAILMFEDDERFKAV...ERprEREDLFEN...YLVE.L
  331-  397 (75.94/41.51)	HKKEkakaAEEhKR..............YVAEYRAFLES...CDFIKASTQWR.....KVQERLEDDERYSRL...EK.fDRLDIFQE...YIRH.L
  398-  479 (72.50/39.28)	EKEE....EEQ.KRVqkdqvrrQERK..NRDGFRKMLEEhvaDGTLNARTRWR.....DYCAQIKDSQSYLAVasnTSgsTPKELFDD...VIEElG
  480-  538 (55.26/28.13)	KQYQ......E.DKI.......QIKE..........VVK...SGKIPMTTSWTleefqTATL..EDDA.LKGI...ST.iNIKLVYDD...QLER.L
  539-  608 (78.48/43.15)	KEKE....QKD.AKK.......RQRL..G.ENFSDLLYS...IKEISASSTWD.....DSKQLFEDSQEFRAL...DSetYARELFEEcvvHLKE.R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.40|      28|      40|     111|     141|       4
---------------------------------------------------------------------------
  111-  141 (39.30/37.86)	NVENtSSSIVG..MQNGGSSTAVVPvaASTEVP
  153-  182 (43.11/29.26)	NDEN.SSLTTGadAEDGTSAEDLVE..AKKTMP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09964 with Med35 domain of Kingdom Viridiplantae
Unable to open file!