<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09963
| Description |
Pre-mRNA-processing protein 40A |
| Sequence | MASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY |
| Length | 991 |
| Position | Unknown |
| Organism | Zea mays (Maize) |
| Kingdom | Viridiplantae |
| Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade>
Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
|
| Aromaticity | 0.06 |
| Grand average of hydropathy | -1.153 |
| Instability index | 54.51 |
| Isoelectric point | 6.27 |
| Molecular weight | 113293.75 |
| Publications | |
Function
| Annotated function |
|
| GO - Cellular Component | U1 snRNP GO:0005685 IBA:GO_Central
U2-type prespliceosome GO:0071004 IBA:GO_Central
|
| GO - Biological Function | RNA binding GO:0003723 IBA:GO_Central
|
| GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro
mRNA splicing, via spliceosome GO:0000398 IBA:GO_Central
|
Interaction
Repeat regions
| Repeats |
>MDP09963
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 163.97| 27| 27| 830| 856| 1
---------------------------------------------------------------------------
590- 619 (24.44/ 9.45) ERL.........EDDERYSRLEKFDRldifQEYIRH.......lEK
620- 640 (22.34/ 7.91) E............EEEQKRVQKDQVR....RQERKNR.........
833- 861 (35.18/17.32) ERL.........REEEKAKREKEREE....KEKKKEK...erK.EK
862- 885 (37.15/18.76) ER..........KEKERDHRE.ERE.....KEKGKDR.....S.RR
886- 926 (21.29/ 7.14) DEMefdgadlntHGAKDKKRDKDKEK....KHKRRHHdtddvS.SE
927- 948 (23.57/ 8.81) RDD.........KDDAKKSRRHSSDR....KKSRK...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 397.63| 66| 66| 414| 479| 2
---------------------------------------------------------------------------
414- 479 (95.17/57.75) EKTSEEEPVVY.ATKMEAKNAFKSLL.ES.V....N.VESDWTW.....DQTMRVIINDKRYGAL......KTLGERKQAFNE...YL
483- 547 (93.15/56.36) KKFEAEEKRIK.QRK..ARDDFLAMLeES.K....E.LTSSTRW.....SKAILMFEDDERFKAV......ERPREREDLFEN...YL
555- 585 (26.09/10.24) KAKAAEEHKRY.VAE......YRAFL.ES.C....DfIKASTQW............................................
641- 695 (47.04/24.65) ...................DGFRKML.EE.HvadgT.LNARTRW.....RDYCAQIKDSQSYLAVasntsgSTPKE...LFDD...VI
696- 755 (54.49/29.77) ....EELGKQYqEDKIQIKE....VV.KS.G....K.IPMTTSWtleefQTATL...EDDALKGI......STI.NIKLVYDD...QL
756- 825 (81.70/48.48) ERLKEKEQKDA.KKRQRLGENFSDLL.YSiK....E.ISASSTW.....DDSKQLFEDSQEFRAL......DSETYARELFEEcvvHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 262.95| 39| 39| 181| 219| 3
---------------------------------------------------------------------------
25- 62 (31.28/ 9.71) PQNL......gpP.MPMqfrpvmpS.....Q...HPPQF.....MPPAAQQ..FRPVGE...P........
92- 133 (37.60/12.94) PVSQgvpmvyqpA.RPM.......S.....SapmQQQQQ.....TAYAG........GH...LPTMGAPMQ
134- 174 (45.27/16.86) PLTY........TyQPT.......SippvaQ...PW........STGPGQSVHHVPPLV...PSG.HQPVS
181- 219 (63.56/26.20) PVNL........S.EPS.......S.....S...DWQEH.....TAAEGKKYYYNKKTR...QSSWEKPVE
223- 260 (60.82/24.80) PLER........A.D.A.......S.....T...EWKEF.....TTPEGRKYYFNKVTK...QSKWTIPDE
264- 304 (24.41/ 6.20) AREL........A.ENA.......S.....N...QQPDResgiaTSALVRSAAFEPSTApanQSS......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 70.21| 23| 27| 310| 333| 4
---------------------------------------------------------------------------
320- 348 (30.75/23.53) NSVL.SGpPLPHNVEntsssIVGMQNGGSS
349- 370 (19.54/ 8.65) TAV....vPVAASTE..vplVATDA..GSS
376- 390 (19.92/ 8.97) NSSLtTG...............ADAEDGTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.06| 12| 59| 9| 20| 5
---------------------------------------------------------------------------
9- 20 (28.15/13.10) GLP.QPPRPPMMG
69- 81 (23.91/10.11) GMPgQMPHFPQPG
---------------------------------------------------------------------------
|
