<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09962

Description Pre-mRNA-processing protein 40A
SequenceMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length974
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.157
Instability index53.56
Isoelectric point6.22
Molecular weight111516.71
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09962
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     172.81|      27|      27|     813|     839|       1
---------------------------------------------------------------------------
  813-  839 (39.61/15.15)	KEKERLREEEKAK.REKEREEKEKKKEK
  842-  865 (38.77/14.69)	KEKER.KEKERDH.RE.ERE.KEKGKDR
  866-  892 (31.57/10.74)	SRRDEMEFDGADL.NTHGAKDKKRDKDK
  894-  919 (36.64/13.52)	KKHKR.RHHDTDD.VSSERDDKDDAKKS
  922-  949 (26.21/ 7.79)	HSSDRKKSRKHAHgSDSDSENRHKRHKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     243.01|      39|      39|     164|     202|       2
---------------------------------------------------------------------------
   55-   74 (20.18/ 7.07)	....................................GQM............PHFPQPGQ...HLPHSNQVP
   75-  130 (29.34/14.36)	PV.SQgvpmvyqpARPMSSapmQQQQQ.....TAYAGGHlptmgapmqpltYTY........QPTSIPPV.
  132-  157 (37.02/20.47)	..............QP.......W........STGPGQS............VHHVPPLV...PSG.HQPVS
  164-  202 (68.98/45.88)	PV.NL........SEPSSS...DWQEH.....TAAEGKK............YYYNKKTR...QSSWEKPVE
  206-  243 (64.29/42.15)	PL.ER........AD.AST...EWKEF.....TTPEGRK............YYFNKVTK...QSKWTIPDE
  246-  287 (23.19/ 9.46)	VArEL........AENASN...QQPDResgiaTSALVRS............AAFEPSTApanQSS......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.64|      16|      18|       8|      24|       3
---------------------------------------------------------------------------
    8-   23 (35.59/20.16)	PQNLGPPMPMQFRPVM
   28-   43 (32.05/18.90)	PPQFMPPAAQQFRPVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     456.56|      66|      66|     453|     518|       4
---------------------------------------------------------------------------
  396-  464 (62.87/33.13)	......EEKTS.......EEEpvvyatkmEAKNAFKSLLE....SVNVESDWTWD.....QTMRVIINDKRYGAL...KTlgERKQAFNE...YLNQ
  465-  532 (97.25/55.32)	RKKFEAEEKRI.......KQR........KARDDFLAMLEE...SKELTSSTRWS.....KAILMFEDDERFKAV...ERprEREDLFEN...YLVE
  533-  599 (87.15/48.80)	LHKKEKAKAAE.......EHK........RYVAEYRAFLES...CDFIKASTQWR.....KVQERLEDDERYSRL...EK.fDRLDIFQE...YIRH
  600-  680 (74.79/40.83)	LEKEEEEQKRVqkdqvrrQER........KNRDGFRKMLEEhvaDGTLNARTRWR.....DYCAQIKDSQSYLAVasnTSgsTPKELFDD...VIEE
  682-  740 (55.61/28.44)	GKQYQ..EDKI.......QIK........E........VVK...SGKIPMTTSWTleefqTATL..EDDA.LKGI...ST.iNIKLVYDD...QLER
  741-  810 (78.88/43.47)	LKEKEQKDAKK.......RQR........LG.ENFSDLLYS...IKEISASSTWD.....DSKQLFEDSQEFRAL...DSetYARELFEEcvvHLKE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09962 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
2) IPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
3) MMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
816
240
1
974
408
189










Molecular Recognition Features






MoRF SequenceStartStop




1) KKHKRRHH
2) KSRKH
3) RHKRHKKDR
894
928
943
901
932
951