<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09961

Description Pre-mRNA-processing protein 40A
SequenceMASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHG
Length899
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-1.007
Instability index52.90
Isoelectric point5.80
Molecular weight102402.25
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09961
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     233.48|      28|      28|      16|      43|       1
---------------------------------------------------------------------------
   16-   43 (58.63/28.78)	PPMMGSSAQ..PQNLGPPM......PM.QFRPVMPSQ
   46-   60 (28.10/10.23)	PQFMPPAAQ...................QFRPV...G
   61-   82 (39.03/16.87)	EPMAGA.......NVGMPG......QM.PHFP.QPGQ
   83-  116 (32.77/13.07)	H..LPHSNQvpPVSQGVPMvyqparPM.SSAPMQQQQ
  118-  139 (32.99/13.20)	TAYAGGH.L..P.TMGAPM...........QPLTYTY
  141-  169 (41.97/18.66)	PTSIPPVAQ..PWSTGPGQ......SVhHVPPLVPSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     144.75|      25|      26|     830|     854|       2
---------------------------------------------------------------------------
  531-  564 (31.21/15.86)	KAVERPREREDlfenylvelHK...............KEKAKAAEEHKR
  587-  626 (31.20/15.85)	KVQERLEDDER.........YSrlekfdrldifqeyiRHLEKEEEEQKR
  830-  854 (43.61/25.57)	KEKERLREEEK.........AK...............REKEREEKEKKK
  859-  880 (38.73/21.75)	KEKER.KEKER.........DH...............RE.ERE.KEKGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     226.08|      39|      39|     181|     219|       3
---------------------------------------------------------------------------
  171-  215 (63.85/34.16)	QPVSapttlpPVNLSEPSS....SDWQ..EH.....TAAEGKKYY...YNKKTR...QSSWE
  216-  256 (62.31/33.15)	KPVE...lmtPLERAD.AS....TEWK..EF.....TTPEGRKYY...FNKVTK...QSKWT
  257-  304 (34.40/14.91)	IPDE...lkvARELAENAS....NQQP..DResgiaTSALVRSAA...FEPSTApanQSS..
  371-  400 (25.13/ 8.85)	...........RNNDENSSlttgADAE..DG.....TSAE..DLV...EAKK.........T
  401-  448 (40.40/18.83)	MPVAgkinvtPVE..EKTS....EEEPvvYA.....TKMEAKNAFkslLESVNV...ESDWT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.69|      13|      27|     310|     333|       4
---------------------------------------------------------------------------
  310-  322 (22.60/12.24)	IASSAHDGSSNSV
  339-  351 (22.09/12.35)	IVGMQNGGSSTAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.71|      17|      66|     500|     517|       5
---------------------------------------------------------------------------
  475-  490 (18.07/ 7.23)	.FNEYLNQR...KKFEAEEK
  500-  516 (26.07/ 9.17)	DFLAMLEES...KELTSSTR
  642-  661 (23.57/ 8.44)	GFRKMLEEHvadGTLNARTR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09961 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
2) MASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
3) REEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHG
257
1
836
425
206
899










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYY
2) GRKYYFN
200
241
204
247