<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09960

Description Pre-mRNA-processing protein 40A
SequenceMASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFSFE
Length808
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.846
Instability index53.17
Isoelectric point5.60
Molecular weight91012.71
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09960
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     400.84|      66|      66|     470|     535|       1
---------------------------------------------------------------------------
  429-  467 (40.02/20.99)	.................................EAKNAFKSLL.E...SVNVESDWTWDQTMRVIINDKRYGAL...KT
  470-  535 (102.74/65.11)	ERKQAFNEYLNQRKKFEAEEKRI.......KQRKARDDFLAMLEE...SKELTSSTRWSKAILMFEDDERFKAV...ER
  538-  603 (95.69/60.15)	EREDLFENYLVELHKKEKAKAAE.......EHKRYVAEYRAFLES...CDFIKASTQWRKVQERLEDDERYSRL...EK
  605-  683 (83.67/51.70)	DRLDIFQEYIRHLEKEEEEQKRVqkdqvrrQERKNRDGFRKMLEEhvaDGTLNARTRWRDYCAQIKDSQSYLAVasnTS
  746-  805 (78.73/48.22)	NIKLVYDDQLERLKEKEQKDAKK.......RQRLG.ENFSDLLYS...IKEISASSTWDDSKQLFEDSQEF........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     295.19|      39|      39|     181|     219|       2
---------------------------------------------------------------------------
   25-   46 (23.47/ 6.87)	.......................PQNL........G.PPMPM...QFRPVMPSQHPP
   47-   74 (37.45/15.67)	QFMPPAAQQ...FRPV....................gEPMAG......ANVGMPGQM
   75-  124 (49.69/23.38)	PHFPQPGQHLPHSNQVP......PVSQgvpmvyqpA.RPMSSapmQQQQQTAYAGGH
  137-  158 (32.31/12.43)	YTY.....QPTSIPPV....................aQP.......W...STGPGQS
  159-  202 (54.07/26.13)	VHHVPPLVPSG.HQPVSapttlpPVNL........S.EPSSS...DWQEHTAAEGKK
  203-  243 (56.17/27.46)	YYYNKKTRQSSWEKPVE...lmtPLER........A.D.AST...EWKEFTTPEGRK
  244-  281 (42.04/18.56)	YYFNKVTKQSKWTIPDE...lkvAREL........A.ENASN.....QQPDRESG..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.17|      24|      26|     310|     333|       3
---------------------------------------------------------------------------
  324-  352 (33.15/21.15)	SGPPLPHNVEntsssIVGMQNGGSSTAVV
  356-  379 (34.02/21.92)	ASTEVPLVAT.....DAGSSRNNDENSSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09960 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
2) MASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
257
1
425
206










Molecular Recognition Features






MoRF SequenceStartStop




1) FSDLLYSIKEISAS
2) GKKYYY
3) GRKYYFN
4) QLFEDSQE
776
200
241
797
789
205
247
804