<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09959

Description Pre-mRNA-processing protein 40A
SequenceMKFVTLLYHFQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKVSIFDILCKSS
Length519
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy-1.441
Instability index45.55
Isoelectric point8.65
Molecular weight62780.66
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09959
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     488.84|      66|      66|      30|      95|       1
---------------------------------------------------------------------------
   26-   93 (99.69/38.22)	KTlgERKQAFNE...YLNQ.RKKFE....AEE.KRI.......K.QRKARDDFLAMLE..E...SKELTSSTRWS.....KAILMFEDDERFKAV
   94-  161 (78.01/28.44)	ERprEREDLFEN...YLVE.LHKKEkakaAEEhKR.............YVAEYRAFLE..S...CDFIKASTQWR.....KVQERLEDDERYSRL
  162-  238 (81.41/29.97)	EK.fDRLDIFQE...YIRH.LEKEE....EEQ.KRVqkdqvrrQ.ERKNRDGFRKMLE..EhvaDGTLNARTRWR.....DYCAQIKDSQSYLAV
  242-  302 (46.59/14.25)	TSgsTPKELFDD...VIEElGKQYQ......E.DKI.......Q.IK..........EvvK...SGKIPMTTSWTleefqTATL..EDDA.LKGI
  303-  368 (77.44/28.18)	ST.iNIKLVYDD...QLER.LKEKE....QKD.AKK.......R.QRLG.ENFSDLLY..S...IKEISASSTWD.....DSKQLFEDSQEFRAL
  369-  414 (33.87/ 8.51)	DSetYARELFEEcvvHLKE.RLK.......EK.ERL.......ReEEKA................KREK.................EREEKEKKK
  415-  469 (71.82/25.64)	EK..ERKEKERK...EKER.DHREE....REK.EKG.......K.DRSRRDE...MEF..D...GADL..NTHGA.....K......DKKRDKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.43|      15|      20|     471|     487|       2
---------------------------------------------------------------------------
  471-  487 (21.85/18.08)	KKHKRrhHDTDDVSSER
  494-  508 (25.58/13.51)	KKSRR..HSSDRKKSRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09959 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKVSIFDILCK
393
517










Molecular Recognition Features






MoRF SequenceStartStop




1) SRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKVSIFDILCKSS
443
519