<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09958

Description Pre-mRNA-processing protein 40A
SequenceMASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVCWREGLYRLQPPRDGGGAADAQAEGRRSTAGRQERRAMEKEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKDRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length969
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.150
Instability index54.88
Isoelectric point6.43
Molecular weight110303.55
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09958
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     212.07|      31|      32|      29|      59|       1
---------------------------------------------------------------------------
   27-   50 (44.91/19.96)	.......NLGPPMPM.QFRPV.MPSQH.P...P....QFMP
   51-   80 (41.71/18.06)	PAAQQFRPVGEPMAG.A..NVgMPGQM.P.hfP....Q..P
   85-  119 (44.51/19.72)	PHSNQVPPVSQGVPM.VYQPA.RPMSS.A...PmqqqQQTA
  120-  145 (42.09/18.29)	YAGGHLPTMGAPM.....QPL.TYTYQ.P...T....S.IP
  146-  180 (38.85/16.36)	PVAQPW.STGPGQSVhHVPPL.VPSGHqPvsaP....TTLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     436.71|      65|      65|     543|     607|       2
---------------------------------------------------------------------------
  479-  541 (55.13/23.90)	......ESVN..VESDWTWD.....QTMRVIIN.....DKRYGAL......KTLGERKQAFNEYLNQRK.....KFEaeekrikQRKARDDF.....
  543-  607 (105.90/51.95)	AMLE..ESKE..LTSSTRWS.....KAILMFED.....DERFKAV......ERPREREDLFENYLVELH.....KKE.......KAKAAEEHKRYVA
  611-  666 (76.14/35.51)	AFLE..SCDF..IKASTQWR.....KVQERLED.....DERYSRL......EK.FDRLDIFQEYIRHLE.....KEE............EEQKR...
  667-  705 (26.57/ 8.13)	...........................I...KD.....SQSYLAVasntsgSTPKE...LFDDVIEELG.....KQ............YQEDK...I
  706-  772 (67.10/30.51)	QIKEvvKSGK..IPMTTSWTleefqTATL..ED.....DA.LKGI......STINIKL.VYDDQLERLK.....EKE.......Q.KDAKKRQRLGE
  776-  832 (50.07/21.11)	DLLY..SIKDraLDSET.YA.....RE..LFEEcvvhlKERLKEK......ERLREEEK.........A.....KRE.......KEREEKEKKK...
  833-  893 (55.81/24.28)	.......EKE..RKEKERKE.....KERDHREE.....REKEKGK......DRSRRDEMEFDGADLNTHgakdkKRD.......KDK.EKKHKR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.14|      39|      39|     181|     219|       3
---------------------------------------------------------------------------
  181-  219 (72.47/40.17)	PVNLSEPSSSDWQEH.....TAAEGKKYYYNKKTR...QSSWEKPVE
  223-  260 (71.35/39.43)	PLERAD.ASTEWKEF.....TTPEGRKYYFNKVTK...QSKWTIPDE
  264-  304 (33.32/14.67)	ARELAENASNQQPDResgiaTSALVRSAAFEPSTApanQSS......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.37|      23|      24|     907|     929|       4
---------------------------------------------------------------------------
  907-  929 (41.36/21.71)	DKDDAKKSRRHSSDRKKSRKH.AH
  932-  955 (38.01/19.36)	DSDSENRHKRHKKDRDSSRRNgAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.87|      18|      26|     312|     335|       5
---------------------------------------------------------------------------
  312-  329 (34.80/13.72)	SSA.....HDGSSNSVL...SGPPLP
  336-  361 (17.07/12.83)	SSSivgmqNGGSSTAVVpvaASTEVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.82|      14|      17|     439|     455|       6
---------------------------------------------------------------------------
  439-  455 (17.32/17.53)	KTMPVagkINVTPVEEK
  458-  471 (22.50/12.44)	EEEPV...VYATKMEAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.00|      17|      17|     403|     419|       7
---------------------------------------------------------------------------
  403-  419 (29.86/17.97)	RLQPPRDGGGAADAQAE
  422-  438 (26.14/14.70)	RSTAGRQERRAMEKEAK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09958 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAE
2) KERLREEEKAKREKEREEKEKKKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGAKDKKRDKDKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
3) MASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
4) QPPRDGGGAADAQAEGRRSTAGRQERRAMEKEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
257
810
1
405
392
969
206
465










Molecular Recognition Features






MoRF SequenceStartStop




1) KKHKRRHH
2) RHKRHKKDR
889
938
896
946