<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09957

Description Pre-mRNA-processing protein 40A
SequenceMASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVGEPMAGANVGMPGQMPHFPQPGQHLPHSNQVPPVSQGVPMVYQPARPMSSAPMQQQQQTAYAGGHLPTMGAPMQPLTYTYQPTSIPPVAQPWSTGPGQSVHHVPPLVPSGHQPVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAENASNQQPDRESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSAHDGSSNSVLSGPPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLVEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEESKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELGKQYQEDKIQIKEVVKSGKIPMTTSWTLEEFQTATLEDDALKGISTINIKLVYDDQLERLKEKEQKDAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEGLGQ
Length808
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.848
Instability index53.17
Isoelectric point5.64
Molecular weight90857.56
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09957
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     450.45|      66|      66|     470|     535|       1
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  429-  467 (39.17/22.19)	.................................EAKNAFKSLL.E...SVNVESDWTW..DQTM.RVIINDKRYGALKT
  470-  535 (100.89/69.27)	ERKQAFNEYLNQRKKFEAEEKRI.......KQRKARDDFLAMLEE...SKELTSSTRW..SKAI.LMFEDDERFKAVER
  538-  603 (94.92/64.71)	EREDLFENYLVELHKKEKAKAAE.......EHKRYVAEYRAFLES...CDFIKASTQW..RKVQ.ERLEDDERYSRLEK
  605-  678 (80.67/53.84)	DRLDIFQEYIRHLEKEEEEQKRVqkdqvrrQERKNRDGFRKMLEEhvaDGTLNARTRW..RDYC.AQIKDSQSYLAV..
  688-  744 (62.18/39.74)	..KELFDDVIEELGKQYQEDK.I.......QIKE...VVK........SGKIPMTTSWtlEEFQtATLEDD.ALKGIST
  746-  803 (72.61/47.70)	NIKLVYDDQLERLKEKEQKDAKK.......RQR.LGENFSDLLYS...IKEISASSTW..DDSK.QLFEDSQ.......
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.17|      38|      39|     181|     219|       2
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  181-  219 (67.54/38.37)	PVNLSEpSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVE
  223-  260 (72.63/37.43)	PLERAD.ASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     264.41|      43|      43|      16|      58|       3
---------------------------------------------------------------------------
    1-   32 (43.82/15.81)	.......MASNMQSSG..LP......Q..P.....prPPMMGSSAQPQNLGPPM
   33-   72 (70.93/29.69)	PMQFRPVMPSQHPPQF..MPPAAQQFR..P.....vgEPMAGA.....NVGMPG
   73-   97 (39.29/13.49)	QMPHFP.QPGQHLPHSnqVPPVSQ..........................G..V
   98-  132 (61.83/25.03)	PMVYQPARPMSSAPM........QQQQ..Q.......TAYAGGH.LP.TMGAPM
  133-  179 (48.54/18.23)	....QPLTYTYQPTS...IPPVAQPWStgPgqsvhhvPPLVPSGHQPVSAPTTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.76|      26|      26|     274|     299|       4
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  274-  298 (35.51/21.24)	...QQPDRESGI.ATSALVRSAAFEPSTA
  299-  326 (31.31/17.86)	P.aNQSSSAVGIiASSAHDGSSNSVLSGP
  327-  350 (30.94/17.55)	PlpHNVENTS.....SSIVGMQNGGSSTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.14|      14|      25|     386|     399|       5
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  386-  399 (23.22/14.16)	EDGTSAED.LVEAKK
  413-  427 (18.92/10.28)	EEKTSEEEpVVYATK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09957 with Med35 domain of Kingdom Viridiplantae
Unable to open file!