<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09956

Description Pre-mRNA-processing protein 40A
SequenceMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length594
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-1.520
Instability index50.08
Isoelectric point6.55
Molecular weight71370.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09956
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     133.98|      35|      35|     506|     540|       1
---------------------------------------------------------------------------
  426-  453 (32.56/ 8.25)	KERLKEKER..................LR........EEEKAKREKEREEKEKK.......
  455-  478 (29.83/ 6.94)	.....................................EKEKERKEKERKEKERDHREEREK
  479-  531 (43.15/13.33)	EKGKDRSRRdemefdgadlnthgtkdkKR........DKEKEKKHKRRHHDTDDVSSERDD
  532-  577 (28.44/ 6.27)	KDDAKKSRR............hsssdrKKsrkhahgsDSDSENRHKRHKKDRD..SSRRN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     455.12|      66|      66|      70|     135|       2
---------------------------------------------------------------------------
   14-   78 (70.23/31.70)	.....EKTSE..EEPVV.......YATKmeAKNAFKSLLESV....NVESDWTWD.....QTMRVIINDKRYGAL...KTlgERKQAFNEY
   79-  146 (99.46/47.81)	LNQ.RKKFEA..EEKRI.......KQRK..ARDDFLAMLEER...KELTSSTRWS.....KAILMFEDDERFKAV...ERprEREDLFENY
  150-  213 (79.17/36.62)	LHK.KEKAKAaeEHKR..............YVAEYRAFLESC...DFIKASTQWR.....KVQERLEDDERYSRL...EK.fDRLDIFQEY
  214-  294 (78.36/36.18)	IRH.LEKEEE..EQKRVqkdqvrrQERK..NRDGFRKMLEEHvadGTLNARTRWR.....DYCAQIKDSQSYLAVasnTSgsTPKELFDDV
  295-  354 (51.10/21.15)	IEElDKQYQE..DKTQI.......KE.V..VKSGKIPM............TTSWTleefqTAIL..EDDA.LKGI...ST.iNIKLIYDDQ
  355-  420 (76.81/35.33)	LER.LKEKEQ..KEAKK.......RQRL..G.ENFSDLLYSI...KEISASSTWD.....DSKQLFEDSQEFRAL...DSetYARELFEE.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09956 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
433
594










Molecular Recognition Features






MoRF SequenceStartStop




1) DAKKSRRHSSSDRKKSRKHAHGS
2) ENRHKRHKKDRDS
3) KHKRRHHDTDDVSSERDDK
4) MEFDGADLN
5) RNGAHELEDGELGEDGEIY
534
561
514
490
576
556
573
532
498
594