<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09954

Description Pre-mRNA-processing protein 40A
SequenceMASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLTMGAPMQPLTYTYQPTSIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEGLGQ
Length808
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.845
Instability index53.01
Isoelectric point5.53
Molecular weight90969.70
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09954
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.01|      34|      39|     181|     219|       1
---------------------------------------------------------------------------
  181-  219 (61.16/44.91)	PvnlseP.....SSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVE
  222-  260 (60.85/35.02)	T.....PleradASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.76|      16|      17|      22|      37|       2
---------------------------------------------------------------------------
   14-   30 (21.58/ 7.38)	PR........P...PmmgsSAQPQNLGP
   31-   50 (27.03/11.06)	PM........PMQFRpvipSQPPPQFVP
  131-  155 (20.15/ 6.40)	PMqpltytyqPTSIP...pVVQPWSTGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     393.49|      66|      66|     470|     535|       3
---------------------------------------------------------------------------
  414-  467 (55.76/34.57)	.............EKTSEEEPVV.......YATKmeAKNAFKSLL.ES...VNVESDWTWDQTMRVIINDKRYGAL...KT
  470-  535 (102.82/70.39)	ERKQAFNEYLNQRKKFEAEEKRI.......KQRK..ARDDFLAMLEER...KELTSSTRWSKAILMFEDDERFKAV...ER
  538-  603 (91.56/61.82)	EREDLFENYLVELHKKEKAKAAE.......EHKR..YVAEYRAFLESC...DFIKASTQWRKVQERLEDDERYSRL...EK
  605-  683 (83.68/55.82)	DRLDIFQEYIRHLEKEEEEQKRVqkdqvrrQERK..NRDGFRKMLEEHvadGTLNARTRWRDYCAQIKDSQSYLAVasnTS
  748-  801 (59.67/37.55)	..KLIYDDQLERLKEKEQKEAKK.......RQRL..G.ENFSDLLYSI...KEISASSTWDDSKQLFED............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.32|      17|      19|      55|      71|       4
---------------------------------------------------------------------------
   55-   71 (33.45/15.68)	QFRSVGEPMPGANVGMP
   76-   92 (35.86/17.29)	HFPQPGQHMPHSNQVPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.01|      24|      32|     301|     329|       5
---------------------------------------------------------------------------
  301-  326 (37.03/26.37)	NQSSSAVGIIAssTHDGSS......NSVLSGA
  334-  355 (37.19/25.06)	NTSSSIVGM....QNGGSS......TAVVPVA
  356-  383 (23.79/11.52)	..ASTEVPLVA..TDAGSSrnndenSSLTTGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09954 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
2) MASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLT
3) SIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
257
1
143
425
127
206










Molecular Recognition Features






MoRF SequenceStartStop




1) EGKKYYYNKK
2) FSDLLYSIKEISAS
3) GRKYYFNK
4) SKQLFED
199
776
241
795
208
789
248
801