<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09953

Description Pre-mRNA-processing protein 40A
SequenceMASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLTMGAPMQPLTYTYQPTSIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKVWYLIFYANQAKHWGCRVWCCSFIQLWF
Length979
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-1.068
Instability index52.86
Isoelectric point6.48
Molecular weight112435.47
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09953
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     105.04|      17|      19|     133|     149|       1
---------------------------------------------------------------------------
   46-   70 (17.30/ 6.20)	P.QFVPPA.AQqfrsvgEPMpgANVGM
   71-   89 (24.74/12.41)	P.GQMPHF.PQ....pgQHM..PHSNQ
  141-  157 (21.94/10.06)	P.TSIPPV.VQ....pwS....TGPGQ
  158-  175 (18.06/ 6.83)	SvTHVPPL.VQ......SGH..QQVSA
  176-  193 (23.00/10.95)	P.TTLPPVnLS......EPS..SSDWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      81.98|      17|      17|     836|     852|       2
---------------------------------------------------------------------------
  836-  851 (21.99/ 8.01)	......REEEKAKREKEREEKE
  852-  869 (20.85/ 7.22)	K....kKEKEKERKEKERKEKE
  870-  891 (19.25/ 6.12)	RdhreeREKEKGKDRSRRDEME
  916-  933 (19.90/ 6.57)	K....rRHHDTDDVSSERDDKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.35|      13|      17|     223|     239|       3
---------------------------------------------------------------------------
  223-  238 (14.96/10.81)	PLERADASTEWkefTT
  245-  257 (24.39/11.11)	YFNKVTKQSKW...TI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.41|      13|      17|       1|      16|       4
---------------------------------------------------------------------------
    1-   14 (21.24/12.13)	MASNMQASGLpQPP
   19-   31 (25.16/13.28)	MGSSAQPQNL.GPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     197.85|      37|      39|     465|     501|       5
---------------------------------------------------------------------------
  429-  465 (26.06/ 8.08)	....EAKN..AFKSL...LES.....VNVES..DwtwdqtmRV.......IINDKRYG....A...L
  466-  502 (57.97/25.05)	KTLGERKQ..AFNEY...LNQRK..KFEAEE..K.......RI.......KQRKARDD....F...L
  503-  547 (35.18/12.93)	AMLEERKEltSSTRW...SKAIL..MFEDDErfK.......AV.......ERPREREDlfenY...L
  557-  601 (37.76/14.30)	KAAEEHKR..YVAEYrafLESCDfiKASTQW..R.......KV.......QERLEDDE....RysrL
  602-  643 (40.87/15.95)	EKF.DRLD..IFQEY...IRHLE..KEEEEQ..K.......RVqkdqvrrQERKNRDG....F....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.22|      12|      46|     303|     314|       6
---------------------------------------------------------------------------
  303-  314 (21.14/12.59)	SSSAVGIIASST
  347-  358 (20.08/11.64)	SSTAVVPVAAST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     175.34|      38|      39|     739|     776|       8
---------------------------------------------------------------------------
  644-  675 (43.72/23.47)	....RK.....MLE..........EHV.........ADG..TLNARTRWRDYCAQIKDSQSY
  676-  703 (40.57/21.29)	LAVASN.....TSG..........................ST..PKELFDDVIEEL.DKQYQ
  704-  764 (38.52/19.89)	EDKT.QikevvKSGkipmttswtlEEFqtaileddaLKGISTINIKLIYDDQLERLKEKEQK
  765-  804 (52.53/29.55)	EAKKRQ.....RLG..........ENF......sdlLYSIKEISASSTWDDS.KQLFEDSQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.80|      16|      18|     389|     406|      10
---------------------------------------------------------------------------
  389-  406 (21.91/18.81)	TSAEDleEAKKTMPV..AGK
  410-  427 (21.89/11.62)	TPVEE..KTSEEEPVvyATK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.71|      18|      39|     893|     910|      11
---------------------------------------------------------------------------
  893-  910 (29.95/21.03)	DGADLNTHGTKDKKRDKE
  934-  951 (28.76/19.85)	DAKKSRRHSSSDRKKSRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09953 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSD
2) IPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
3) MASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLT
4) SIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
833
257
1
143
945
425
127
206










Molecular Recognition Features






MoRF SequenceStartStop




1) RKVWYL
950
955