<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09952

Description Pre-mRNA-processing protein 40A
SequenceMKFVTLLYHFQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKVWYLIFYANQAKHWGCRVWCCSFIQLWF
Length539
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.09
Grand average of hydropathy-1.415
Instability index45.06
Isoelectric point8.75
Molecular weight65682.03
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09952
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.40|      21|      21|     399|     419|       1
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  399-  419 (32.48/12.14)	EKAKRE.........KEREEKEKKKEKEKE
  422-  441 (32.58/12.20)	EKERKE.........KERDHRE.EREKEKG
  443-  472 (23.35/ 6.45)	DRSRRDemefdgadlNTHGTKDKKRDKEKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     458.83|      65|      65|      60|     124|       2
---------------------------------------------------------------------------
   18-   51 (36.02/14.19)	..................................NDKRYGAL......KTLGERKQAFNEY...LNQ..RKKFEA..EEKR
   60-  124 (107.54/57.58)	DFLAMLEER...KELTSSTRWS.....KAILMFEDDERFKAV......ERPREREDLFENYLVELHK..KEKAKAAEEHKR
  128-  186 (93.83/49.26)	EYRAFLESC...DFIKASTQWR.....KVQERLEDDERYSRL......EK.FDRLDIFQEYIRHLEK..EE.....EEQKR
  202-  267 (78.36/39.87)	GFRKMLEEHvadGTLNARTRWR.....DYCAQIKDSQSYLAVasntsgSTPKE...LFDDVIEELDK..Q.....YQEDKT
  276-  331 (63.78/31.03)	GKIPM............TTSWTleefqTAIL..EDDA.LKGI......STINIKL.IYDDQLERLKE..KEQ.KEAKKRQR
  335-  398 (79.31/40.45)	NFSDLLYSI...KEISASSTWD.....DSKQLFEDSQEFRAL......DSETYARELFEECVVHLKErlKEKERLREE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.00|      16|      20|     474|     489|       3
---------------------------------------------------------------------------
  474-  489 (29.09/14.48)	KHKRRHHDTDDVSSER
  496-  511 (26.92/12.90)	KKSRRHSSSDRKKSRK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09952 with Med35 domain of Kingdom Viridiplantae
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