<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09950

Description Pre-mRNA-processing protein 40A
SequenceMASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLTMGAPMQPLTYTYQPTSIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVKPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKV
Length838
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.861
Instability index53.16
Isoelectric point5.59
Molecular weight94890.20
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09950
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     308.91|      38|      38|     179|     216|       1
---------------------------------------------------------------------------
   16-   32 (30.69/13.12)	P....PM.M..G.SSA...QPQNLGPP..........................................M
   33-   74 (56.14/31.04)	PmqfrPV.I..P.SQP...PPQFVPPAAQQF............RSVGEPMPGANVGM...PGQ......M
   75-  101 (31.96/14.02)	P......................HFPQPGQH............M......PHSNQVP...PVSqgvpmvY
  102-  144 (32.87/14.66)	Q....PA.R..P.MSSapmQPQQQAAYAGGHlltmgapmqpltYTY.....Q........PTS......I
  145-  179 (34.42/15.75)	P....PVvQ..PwSTG...PGQSVTHVPP....................LVQSGHQQvsaPTT......L
  180-  217 (68.96/40.06)	P....PV.K..P.SSS...DWQEHTAAEGKK............YYYNKKTRQSSWEK...PVE......L
  219-  258 (53.87/29.44)	T....PL.EraD.AST...EWKEFTTPEGRK............YYFNKVTKQSKWTI...PDE......L
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     482.53|      65|      65|     497|     561|       2
---------------------------------------------------------------------------
  431-  493 (81.76/43.77)	.............FKSLL.ES...VNVESDWTWD.....QTMRVIINDKRYGAL......KTLGERKQAFNEYLNQRKK..FEAEEKRIKQRK
  497-  561 (103.93/57.46)	D............FLAMLEER...KELTSSTRWS.....KAILMFEDDERFKAV......ERPREREDLFENYLVELHK..KEKAKAAEEHKR
  565-  623 (90.22/48.99)	E............YRAFLESC...DFIKASTQWR.....KVQERLEDDERYSRL......EK.FDRLDIFQEYIRHLEK..EEE.....EQKR
  627-  704 (67.09/34.70)	DqvrrqerknrdgFRKMLEEHvadGTLNARTRWR.....DYCAQIKDSQSYLAVasntsgSTPKE...LFDDVIEELDK..Q.....YQEDKT
  711-  768 (57.37/28.70)	...................KS...GKIPMTTSWTleefqTAIL..EDDA.LKGI......STINIKL.IYDDQLERLKE..KEQ.KEAKKRQR
  772-  837 (82.17/44.02)	N............FSDLLYSI...KEISASSTWD.....DSKQLFEDSQEFRAL......DSETYARELFEECVVHLKErlKEKERLREEEK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.98|      26|      26|     271|     296|       3
---------------------------------------------------------------------------
  271-  296 (45.75/25.81)	QQPDQESGI.ATSALVRSAAFEPSTAP
  298-  324 (36.23/19.09)	NQSSSAVGIiASSTHDGSSNSVLSGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.87|      15|      19|     363|     380|       4
---------------------------------------------------------------------------
  363-  377 (24.45/23.20)	DAGSSRNNDENSSLT
  383-  397 (23.42/10.72)	EDGTSAEDLEEAKKT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09950 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
2) MASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLT
3) SIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVKPSSSDWQEHTAAEGKKYYYN
254
1
143
422
127
203










Molecular Recognition Features






MoRF SequenceStartStop




1) AEGKKYYYNKK
2) GRKYYFNKV
3) YSIKEI
195
238
778
205
246
783