<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09949

Description Pre-mRNA-processing protein 40A
SequenceMASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLTMGAPMQPLTYTYQPTSIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length994
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.158
Instability index54.52
Isoelectric point6.18
Molecular weight113794.30
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09949
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      87.74|      17|      19|     133|     149|       1
---------------------------------------------------------------------------
   71-   89 (24.74/11.61)	P.GQMPHF.PQpgQHMPHSNQ
  141-  157 (21.94/ 9.43)	P.TSIPPV.VQpwS..TGPGQ
  158-  175 (18.06/ 6.42)	SvTHVPPL.VQ..SGHQQVSA
  176-  193 (23.00/10.26)	P.TTLPPVnLS..EPSSSDWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     115.29|      17|      17|     836|     852|       2
---------------------------------------------------------------------------
  626-  642 (21.87/ 7.71)	RVQKDQVRRQERKNRDG
  836-  852 (26.97/11.25)	REEEKAKREKEREEKEK
  854-  870 (22.06/ 7.84)	KEKEKERKEKERKEKER
  900-  916 (22.48/ 8.13)	HGTKDKKRDKEKEKKHK
  918-  934 (21.91/ 7.74)	RHHDTDDVSSERDDKDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.80|      16|      17|      22|      37|       3
---------------------------------------------------------------------------
   22-   37 (34.17/20.12)	SAQPQNLGPPMPMQFR
   42-   57 (26.64/13.94)	SQPPPQFVPPAAQQFR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     428.78|      66|      66|     470|     535|       4
---------------------------------------------------------------------------
  429-  494 (81.40/49.26)	.EAKNAFKSLLESV....NVESDWTWDQTMRVIINDKRYGAL...KTlgERKQAFNE...YLNQ.RKKFEAEEKRIKQ
  495-  562 (92.56/57.08)	RKARDDFLAMLEER...KELTSSTRWSKAILMFEDDERFKAV...ERprEREDLFEN...YLVE.LHKKEKAKAAEEH
  563-  625 (77.94/46.84)	KRYVAEYRAFLESC...DFIKASTQWRKVQERLEDDERYSRL...EK.fDRLDIFQE...YIRH.LEKEEEEQK....
  643-  711 (60.41/34.57)	......FRKMLEEHvadGTLNARTRWRDYCAQIKDSQSYLAVasnTSgsTPKELFDD...VIEElDKQYQEDKTQIKE
  712-  770 (58.02/32.89)	.VVKSGKIPMTTSW.......TLEEFQTAIL...EDDALKGI...ST.iNIKLIYDD...QLER.LKEKEQKEAKKRQ
  771-  830 (58.46/33.20)	RLG.ENFSDLLYSI...KEISASSTWDDSKQLFEDSQEFRAL...DSetYARELFEEcvvHLKE.RLK..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.90|      35|      39|     194|     230|       5
---------------------------------------------------------------------------
  194-  228 (65.06/41.24)	EHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERAD
  235-  269 (63.84/42.64)	EFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.11|      18|      25|     937|     954|       6
---------------------------------------------------------------------------
  872-  888 (24.59/11.28)	H........REEREKEKGKDRSRRD..
  937-  953 (23.40/10.36)	.........KSRRHSSSDRKKSRKH.A
  954-  979 (21.13/ 8.58)	HgsdsdsenRHKRH.KKDRDSSRRNgA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.13|      24|      26|     317|     340|       7
---------------------------------------------------------------------------
  281-  307 (24.71/16.58)	GIATSALvrsaafepSTA...............P...ANQSSSAV
  317-  340 (44.90/37.84)	GSSNSVL........SGA.....PL........PHNVENTSSSIV
  346-  378 (16.52/ 7.96)	GSSTAVV........PVAastevPLvatdagssRNNDENSS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.80|      16|      18|     389|     406|      11
---------------------------------------------------------------------------
  389-  406 (21.91/18.28)	TSAEDleEAKKTMPV..AGK
  410-  427 (21.89/11.20)	TPVEE..KTSEEEPVvyATK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09949 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
2) IPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
3) MASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLT
4) SIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
833
257
1
143
994
425
127
206










Molecular Recognition Features






MoRF SequenceStartStop




1) EGKKYYYNKK
2) GRKYYFNK
3) KKHKRRHH
4) RHKRHKKDR
199
241
913
963
208
248
920
971