<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09948

Description Pre-mRNA-processing protein 40A
SequenceMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLTMGAPMQPLTYTYQPTSIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length977
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.164
Instability index54.22
Isoelectric point6.14
Molecular weight112033.27
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09948
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     128.24|      25|      25|     813|     837|       1
---------------------------------------------------------------------------
  514-  547 (28.09/ 8.78)	KAVERPRERE............DlfenylvelHKKEKAKAAEEHKR
  813-  837 (40.01/15.36)	KEKERLREEE............K.........AKREKEREEKEKKK
  839-  863 (33.31/11.66)	KEKERKEKER............K.........EKERDHREEREKEK
  865-  901 (26.83/ 8.09)	KDRSRRDEMEfdgadlnthgtkD.........KKRDKEKEKKHKRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     102.60|      18|      18|       5|      22|       2
---------------------------------------------------------------------------
    5-   21 (31.26/15.92)	...SAQPQNLGPPMPMQFRP
   22-   41 (24.82/11.16)	VipSQPPPQFVPPAAQQFRS
   42-   61 (25.63/11.76)	VgePMPGANVGMPGQMPHFP
  132-  146 (20.90/ 8.26)	.....QPWSTGPGQSVTHVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     170.09|      39|      39|     164|     202|       3
---------------------------------------------------------------------------
  164-  202 (73.31/42.36)	PV.NLSEPSSSDW..QEH...TAAEGKKYYYNKKT...RQSSWEKPVE
  206-  243 (71.67/41.25)	PL.ERAD.ASTEW..KEF...TTPEGRKYYFNKVT...KQSKWTIPDE
  246-  287 (25.10/ 9.72)	VArELAEKASNQQpdQESgiaTSALVRSAAFEPSTapaNQSS......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     113.29|      24|      25|     914|     937|       4
---------------------------------------------------------------------------
  588-  609 (20.10/ 7.41)	DRlDIFQEYIRHLEKEEEEQKR........
  612-  635 (19.94/ 7.29)	.K.DQVRRQER...KNRDGFRKmleeH.VA
  914-  937 (38.59/21.74)	DK.DDAKKSRRHSSSDRKKSRK....H.AH
  940-  963 (34.67/18.70)	DS.DSENRHKRH.KKDRDSSRR....NgAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     192.20|      39|      39|     417|     455|       5
---------------------------------------------------------------------------
  426-  463 (49.43/27.76)	VESDWTWDQTMRVIINDKRYGALKTLGE....RK....................................qaFNEYL...N
  494-  560 (28.00/12.55)	LTSSTRWSKAILMFEDDERF..............kaverpreredlfenylvelhkkekakaaeehkryvaeYRAFLESCD
  562-  581 (20.67/ 7.34)	IKASTQWRKVQERLEDDERY.............................................................
  639-  682 (44.62/24.35)	LNARTRWRDYCAQIKDSQSYLAVASNTSgstpKE.....................................lFDDVIEELD
  769-  804 (49.47/27.79)	ISASSTWDDSKQLFEDSQEFRALDSETY....A........................................RELFEEC.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.62|      20|      26|     300|     323|       6
---------------------------------------------------------------------------
  300-  319 (37.34/29.63)	GSSNSVLSGA.....PL........PHNVENTS
  329-  361 (23.28/ 7.58)	GSSTAVVPVAastevPLvatdagssRNNDENSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.82|      14|      19|      84|      97|       7
---------------------------------------------------------------------------
   62-   75 (16.61/ 6.52)	.QPGQHMPhSNQVPP
   84-   97 (29.98/17.45)	YQPARPMS.SAPMQP
  103-  117 (21.23/10.30)	YAGGHLLTmGAPMQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.45|      14|      17|     382|     398|       8
---------------------------------------------------------------------------
  382-  398 (18.90/17.33)	KTMPVagkINVTPVEEK
  401-  414 (23.55/12.61)	EEEPV...VYATKMEAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.45|      10|      25|     734|     743|       9
---------------------------------------------------------------------------
  734-  743 (17.44/11.11)	YDDQLERLKE
  759-  768 (17.01/10.66)	FSDLLYSIKE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09948 with Med35 domain of Kingdom Viridiplantae
Unable to open file!