<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09947

Description Pre-mRNA-processing protein 40A
SequenceMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length774
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.302
Instability index48.32
Isoelectric point5.87
Molecular weight90070.51
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09947
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.94|      16|      16|     616|     631|       1
---------------------------------------------------------------------------
  616-  631 (24.67/ 8.26)	REEEKAKREKEREEKE
  656-  671 (22.26/ 6.72)	REKEKGKDRSRRDEME
  680-  695 (22.00/ 6.55)	HGTKDKKRDKEKEKKH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.60|      29|      35|     697|     725|       2
---------------------------------------------------------------------------
  697-  725 (51.01/23.89)	RRHHDTDDVSSE...RDDKDDAKKSRRHSSSD
  730-  761 (46.59/21.19)	RKHAHGSDSDSEnrhKRHKKDRDSSRRNGAHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.37|      25|      35|      65|      89|       3
---------------------------------------------------------------------------
   49-   72 (31.15/16.83)	EKASNQQPDQES...GI.......atSALVRSAA
   73-  106 (33.74/18.74)	FEPSTAPANQSSSAVGIiassthdgsSNSVLSGA
  107-  136 (33.48/18.55)	PLPHNV.ENTSSSIVGM...qnggssTAVVPVAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     465.04|      66|      66|     250|     315|       4
---------------------------------------------------------------------------
  194-  247 (56.22/29.91)	.................EKTSE..EEPVV.......YATKmeAKNAFKSLLESV....NVESDWTWD.....QTMRVIINDKRYGAL...KT
  250-  315 (104.46/63.11)	ERKQAFNEY...LNQ.RKKFEA..EEKRI.......KQRK..ARDDFLAMLEER...KELTSSTRWS.....KAILMFEDDERFKAV...ER
  318-  383 (77.73/44.72)	EREDLFENYlveLHK.KEKAKAaeEHKR..............YVAEYRAFLESC...DFIKASTQWR.....KVQERLEDDERYSRL...EK
  385-  463 (83.07/48.40)	DRLDIFQEY...IRH.LEKEEE..EQKRVqkdqvrrQERK..NRDGFRKMLEEHvadGTLNARTRWR.....DYCAQIKDSQSYLAVasnTS
  466-  524 (57.67/30.91)	TPKELFDDV...IEElDKQYQE..DKTQI.......KE.V..VKSGKIPM............TTSWTleefqTAIL..EDDA.LKGI...ST
  526-  590 (85.88/50.33)	NIKLIYDDQ...LER.LKEKEQ..KEAKK.......RQRL..G.ENFSDLLYSI...KEISASSTWD.....DSKQLFEDSQEFRAL...DS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.45|      13|      20|      11|      23|       6
---------------------------------------------------------------------------
   11-   23 (24.59/14.35)	TEWKEFTTPEGRK
   30-   42 (22.85/12.84)	TKQSKWTIPDELK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.60|      12|      20|     144|     155|       7
---------------------------------------------------------------------------
  144-  155 (20.23/13.74)	ATDAGSSRNNDE
  165-  176 (19.38/12.79)	AEDGTSAEDLEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09947 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
2) PDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
613
38
774
205










Molecular Recognition Features






MoRF SequenceStartStop




1) AHELEDGELGEDGEIY
2) ESGIATSALVRSAAFEP
3) HHDTDDV
4) KKSRKHAHG
5) KKSRRH
6) NRHKRHKKDRD
7) PLERADASTEWKEFTTPEGRKYYFNKVTK
8) WTIPDELKVARELAEK
759
59
699
727
716
742
3
35
774
75
705
735
721
752
31
50