<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09947

Description Pre-mRNA-processing protein 40A
SequenceMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKEKERKEKERKEKERDHREEREKEKGKDRSRRDEMEFDGADLNTHGTKDKKRDKEKEKKHKRRHHDTDDVSSERDDKDDAKKSRRHSSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length774
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.302
Instability index48.32
Isoelectric point5.87
Molecular weight90070.51
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09947
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.94|      16|      16|     616|     631|       1
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  616-  631 (24.67/ 8.26)	REEEKAKREKEREEKE
  656-  671 (22.26/ 6.72)	REKEKGKDRSRRDEME
  680-  695 (22.00/ 6.55)	HGTKDKKRDKEKEKKH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.60|      29|      35|     697|     725|       2
---------------------------------------------------------------------------
  697-  725 (51.01/23.89)	RRHHDTDDVSSE...RDDKDDAKKSRRHSSSD
  730-  761 (46.59/21.19)	RKHAHGSDSDSEnrhKRHKKDRDSSRRNGAHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.37|      25|      35|      65|      89|       3
---------------------------------------------------------------------------
   49-   72 (31.15/16.83)	EKASNQQPDQES...GI.......atSALVRSAA
   73-  106 (33.74/18.74)	FEPSTAPANQSSSAVGIiassthdgsSNSVLSGA
  107-  136 (33.48/18.55)	PLPHNV.ENTSSSIVGM...qnggssTAVVPVAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     465.04|      66|      66|     250|     315|       4
---------------------------------------------------------------------------
  194-  247 (56.22/29.91)	.................EKTSE..EEPVV.......YATKmeAKNAFKSLLESV....NVESDWTWD.....QTMRVIINDKRYGAL...KT
  250-  315 (104.46/63.11)	ERKQAFNEY...LNQ.RKKFEA..EEKRI.......KQRK..ARDDFLAMLEER...KELTSSTRWS.....KAILMFEDDERFKAV...ER
  318-  383 (77.73/44.72)	EREDLFENYlveLHK.KEKAKAaeEHKR..............YVAEYRAFLESC...DFIKASTQWR.....KVQERLEDDERYSRL...EK
  385-  463 (83.07/48.40)	DRLDIFQEY...IRH.LEKEEE..EQKRVqkdqvrrQERK..NRDGFRKMLEEHvadGTLNARTRWR.....DYCAQIKDSQSYLAVasnTS
  466-  524 (57.67/30.91)	TPKELFDDV...IEElDKQYQE..DKTQI.......KE.V..VKSGKIPM............TTSWTleefqTAIL..EDDA.LKGI...ST
  526-  590 (85.88/50.33)	NIKLIYDDQ...LER.LKEKEQ..KEAKK.......RQRL..G.ENFSDLLYSI...KEISASSTWD.....DSKQLFEDSQEFRAL...DS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.45|      13|      20|      11|      23|       6
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   11-   23 (24.59/14.35)	TEWKEFTTPEGRK
   30-   42 (22.85/12.84)	TKQSKWTIPDELK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.60|      12|      20|     144|     155|       7
---------------------------------------------------------------------------
  144-  155 (20.23/13.74)	ATDAGSSRNNDE
  165-  176 (19.38/12.79)	AEDGTSAEDLEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09947 with Med35 domain of Kingdom Viridiplantae
Unable to open file!