<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09946

Description Pre-mRNA-processing protein 40A
SequenceMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLTMGAPMQPLTYTYQPTSIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKV
Length824
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.859
Instability index53.21
Isoelectric point5.47
Molecular weight93444.44
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09946
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.03|      34|      39|     164|     202|       1
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  164-  202 (62.65/46.25)	PvnlseP.....SSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVE
  205-  243 (62.38/36.17)	T.....PleradASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     125.73|      17|      17|     116|     132|       2
---------------------------------------------------------------------------
   26-   37 (23.07/ 8.43)	QP.....PP.QFVPPAAQ
   46-   62 (29.22/12.41)	MPGANVGMP.GQMPHFPQ
   85-   96 (21.26/ 7.27)	QP....ARP.MSSAP.MQ
  116-  132 (31.74/14.04)	QPLTYTYQP.TSIPPVVQ
  135-  150 (20.43/ 6.73)	S..TGPGQSvTHVPPLVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     472.27|      65|      65|     483|     547|       3
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  417-  479 (80.32/58.54)	.............FKSLL.ES...VNVESDWTWD.....QTMRVIINDKRYGAL......KTLGERKQAFNEYLNQRKK..FEAEEKRIKQRK
  483-  547 (104.61/78.95)	D............FLAMLEER...KELTSSTRWS.....KAILMFEDDERFKAV......ERPREREDLFENYLVELHK..KEKAKAAEEHKR
  551-  609 (89.15/65.96)	E............YRAFLESC...DFIKASTQWR.....KVQERLEDDERYSRL......EK.FDRLDIFQEYIRHLEK..EEE.....EQKR
  613-  690 (65.83/46.37)	DqvrrqerknrdgFRKMLEEHvadGTLNARTRWR.....DYCAQIKDSQSYLAVasntsgSTPKE...LFDDVIEELDK..Q.....YQEDKT
  700-  754 (50.84/33.78)	.........................KIPMTTSWTleefqTAIL..EDDA.LKGI......STINIKL.IYDDQLERLKE..KEQ.KEAKKRQR
  758-  823 (81.52/59.55)	N............FSDLLYSI...KEISASSTWD.....DSKQLFEDSQEFRAL......DSETYARELFEECVVHLKErlKEKERLREEEK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.70|      26|      26|     257|     282|       4
---------------------------------------------------------------------------
  257-  275 (24.64/12.19)	.........QQ.PD............QESGIATSALVRSAA
  276-  303 (33.42/19.27)	FEPSTAPanQS.SS............AVGIIASSTHDGSSN
  304-  339 (24.64/12.20)	SVLSGAP....lPHnventsssivgmQNGGSST.AVVPVAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.87|      15|      18|     349|     366|       5
---------------------------------------------------------------------------
  349-  363 (24.45/17.07)	DAGSSRNNDENSSLT
  369-  383 (23.42/ 7.82)	EDGTSAEDLEEAKKT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09946 with Med35 domain of Kingdom Viridiplantae
Unable to open file!