<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09945

Description Pre-mRNA-processing protein 40A
SequenceMASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLTMGAPMQPLTYTYQPTSIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRVQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKV
Length841
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.858
Instability index53.59
Isoelectric point5.51
Molecular weight95205.47
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09945
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.01|      34|      39|     181|     219|       1
---------------------------------------------------------------------------
  181-  219 (61.16/51.15)	PvnlseP.....SSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVE
  222-  260 (60.85/39.96)	T.....PleradASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     401.75|      66|      66|     470|     535|       2
---------------------------------------------------------------------------
  421-  489 (80.71/54.48)	PVV.......YATKmeAKNAFKSLL.ES......................VNVESDWTWDQTMRVIINDKRYGAL...KT..................lgERKQAFNEYLNQRK.....KFEAEE
  490-  557 (96.30/66.59)	KRI.......KQRK..ARDDFLAMLEER......................KELTSSTRWSKAILMFEDDERFKAV...ER..................prEREDLFENYLVELH.....KKEKAK
  558-  624 (89.71/61.47)	AAE.......EHKR..YVAEYRAFLESC......................DFIKASTQWRKVQERLEDDERYSRL...EK...................fDRLDIFQEYIRHLE.....KEEEEQ
  625-  728 (61.15/39.28)	KRVqkdqvrrQERK..NRDGFRKMLEEH...................vadGTLNARTRWRDYCAQIKDSQSYLAVasnTSgstpkelfddvieeldkqyqEDKTQIKEVVKSGKipmttSWTLEE
  743-  832 (73.89/49.18)	STI.......NIKL..IYDDQLERLKEKeqkeakkrqrlgenfsdllysiKEISASSTWDDSKQLFEDSQEFRAL...DS..................etYARELFEECVVHLK.....ERLKEK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     143.73|      17|      18|     133|     149|       3
---------------------------------------------------------------------------
   43-   54 (22.92/ 9.67)	QP.......PP.QFVPPAAQ
   61-   79 (23.74/10.32)	EPMpgANVGMP.GQMPHFPQ
   82-   95 (24.98/11.29)	QHM..PHSNQ....VPPVSQ
  102-  113 (21.12/ 8.26)	QP......ARP.MSSAP.MQ
  133-  149 (30.71/15.80)	QPL..TYTYQP.TSIPPVVQ
  152-  167 (20.26/ 7.58)	S....TGPGQSvTHVPPLVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.98|      26|      26|     274|     299|       4
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  274-  299 (45.75/28.87)	QQPDQESGI.ATSALVRSAAFEPSTAP
  301-  327 (36.23/21.36)	NQSSSAVGIiASSTHDGSSNSVLSGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.96|      31|      39|     331|     364|       6
---------------------------------------------------------------------------
  331-  364 (40.26/41.53)	NVENtSSSIVGMQ.NGGSSTAVVPVAASTeVPlVA
  373-  404 (48.70/33.17)	NDEN.SSLTTGADaEDGTSAEDLEEAKKT.MP.VA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09945 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
2) MASNMQASGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLT
3) SIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
257
1
143
425
127
206










Molecular Recognition Features






MoRF SequenceStartStop




1) EGKKYYYNKK
2) GRKYYFNK
3) YSIKEI
199
241
781
208
248
786