<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09944

Description Pre-mRNA-processing protein 40A
SequenceMGTMAGEICITGAGANGTRSTFASYNGNGAVISGGALPTLCWYFDGGLMASNMQASGLPQATAPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLTMGAPMQPLTYTYQPTSIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKDRALDSETYARELFEECVVHLKERLKEKERLREEEKGHRSFDCPLIKESVWHRISPTAASGSSGIPSRPVTPVSAWHKYSLPRCDSCRTGGGRALLQPEARVSVWNRISVVKAKPKKLVWRRKAHQHLQVAGAVPATPCKAALMAGNVWCPGSRSLGGGSRDSLRADDGNAVLARDRSGTCQPPVTNQGTACQISCTVDTSELHKIADPLLDCLLADWETRHSSMFHQSSRIFIDPCCLDMTVDLGGFGPQSSNWDLGYLRVNLSGFSLPSGMVYGGATTVKIFYQRRRKTTAGNKIATINDDDNVEAHALRLGLDVDVTAVTPSDPPSDVEGAADTPSEIISRFHGPLLLEYNGTARRADADSTVPLRPEVVASNDSSMQSFGDSCESSLDPSSSMESRRRSFMAKITMAPSQLLAAPVLPKRMHMAQIQIVKTGTKDIKRTEIVVEEMEHMSWKMVNLERMGRSISLSVCYRDCQ
Length1309
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.629
Instability index54.14
Isoelectric point6.30
Molecular weight145393.17
Publications









Function






Annotated function


GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09944
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     432.03|      65|      66|     551|     615|       1
---------------------------------------------------------------------------
  485-  547 (81.12/52.09)	.FKSLL.ES...VNVESDWTWD.....QTMRVIIN.....DKRYGAL......KTLGERKQAFNEYLNQRKKFEAEEKRIKQRK
  551-  615 (106.54/70.89)	DFLAMLEER...KELTSSTRWS.....KAILMFED.....DERFKAV......ERPREREDLFENYLVELHKKEKAKAAEEHKR
  619-  677 (89.98/58.64)	EYRAFLESC...DFIKASTQWR.....KVQERLED.....DERYSRL......EK.FDRLDIFQEYIRHLEKEE.....EEQKR
  690-  755 (73.73/46.63)	GFRKMLEEHvadGTLNARTRWR.....DYCAQIKD.....SQSYLAVasntsgSTPKE...LFDDVIEELDKQ.....YQEDKT
  765-  819 (54.19/32.17)	.............KIPMTTSWTleefqTAIL..ED.....DA.LKGI......STINIKL.IYDDQLERLKEKEQ.KEAKKRQR
  826-  867 (26.47/11.68)	DLLYSIKDR....ALDSET.YA.....RE..LFEEcvvhlKERLKEK......ERLREEE........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.01|      34|      39|     232|     270|       2
---------------------------------------------------------------------------
  232-  270 (61.16/49.58)	PvnlseP.....SSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVE
  273-  311 (60.85/38.71)	T.....PleradASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.22|      17|      18|      59|      76|       3
---------------------------------------------------------------------------
   48-   68 (20.50/11.52)	LMASNMQ..A..sglPQATAPPRpP
  134-  157 (20.72/ 6.51)	HMPHSNQvpPvsqgvPMVYQPAR.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      99.47|      17|      17|     184|     200|       4
---------------------------------------------------------------------------
   94-  105 (22.86/ 8.54)	Q........P.....PP.QFVPPAAQ
  106-  130 (24.07/ 9.40)	QfrsvgepmPGANVGMP.GQMPHFPQ
  184-  200 (30.51/14.00)	Q........PLTYTYQP.TSIPPVVQ
  203-  218 (22.03/ 7.95)	S..........TGPGQSvTHVPPLVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.35|      24|      26|     883|     908|       5
---------------------------------------------------------------------------
  883-  906 (45.61/23.79)	WHRIS.PTAASGSSGIPSR............PVTPVS
  908-  935 (34.60/15.19)	WHKYSlPRCDSCRTG.GGR........allqPEARVS
  937-  972 (34.13/14.83)	WNRIS.VVKAKPKKLVWRRkahqhlqvagavPATPCK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.98|      26|      26|     325|     350|       6
---------------------------------------------------------------------------
  325-  350 (45.75/30.46)	QQPDQESGI.ATSALVRSAAFEPSTAP
  352-  378 (36.23/22.36)	NQSSSAVGIiASSTHDGSSNSVLSGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.87|      15|      18|     417|     434|       7
---------------------------------------------------------------------------
  417-  431 (24.45/18.96)	DAGSSRNNDENSSLT
  437-  451 (23.42/ 8.55)	EDGTSAEDLEEAKKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.38|      13|      17|      17|      29|       9
---------------------------------------------------------------------------
   17-   29 (24.01/13.15)	GTRSTFASYNGNG
   35-   47 (27.37/15.99)	GALPTLCWYFDGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      51.60|      11|      46|     404|     414|      10
---------------------------------------------------------------------------
  404-  414 (18.33/ 9.98)	PVAASTEVPLV
  453-  463 (17.49/ 9.16)	PVAGKINVTPV
  464-  474 (15.79/ 7.52)	EEKTSEEEPVV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09944 with Med35 domain of Kingdom Viridiplantae
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