<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09943

Description Pre-mRNA-processing protein 40A
SequenceMGTMAGEICITGAGANGTRSTFASYNGNGAVISGGALPTLCWYFDGGLMASNMQASGLPQATAPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLTMGAPMQPLTYTYQPTSIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYATKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRIKQRKARDDFLAMLEERKELTSSTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKASTQWRKVQERLEDDERYSRLEKFDRLDIFQEYIRHLEKEEEEQKRDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSQSYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINIKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKDRALDSETYARELFEECVVHLKERLKEKERLREEEKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
Length911
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.851
Instability index52.27
Isoelectric point5.59
Molecular weight102302.03
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09943
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.35|      40|      40|     242|     281|       1
---------------------------------------------------------------------------
  242-  281 (78.35/52.05)	DWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERAD.AS
  283-  323 (71.00/46.46)	EWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEkAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     431.06|      65|      65|     551|     615|       2
---------------------------------------------------------------------------
  485-  547 (80.68/56.94)	.FKSLL.ES...V..NVESDWTWD.....QTMRVIIN.....DKRYGAL......KTLGERKQAFNEYLNQRKKFEAEEKRIKQRK
  551-  615 (106.25/77.65)	DFLAMLEER...K..ELTSSTRWS.....KAILMFED.....DERFKAV......ERPREREDLFENYLVELHKKEKAKAAEEHKR
  619-  677 (89.31/63.93)	EYRAFLESC...D..FIKASTQWR.....KVQERLED.....DERYSRL......EK.FDRLDIFQEYIRHLEKEEE.....EQKR
  690-  755 (73.59/51.20)	GFRKMLEEHvadG..TLNARTRWR.....DYCAQIKD.....SQSYLAVasntsgSTPKE...LFDDVIEELDKQ.....YQEDKT
  759-  819 (55.17/36.28)	......EVV...KsgKIPMTTSWTleefqTAIL..ED.....DA.LKGI......STINIKL.IYDDQLERLKEKEQ.KEAKKRQR
  826-  867 (26.06/12.70)	DLLYSIKDR......ALDSET.YA.....RE..LFEEcvvhlKERLKEK......ERLREEE........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.07|      19|      19|      59|      77|       3
---------------------------------------------------------------------------
   48-   68 (28.00/10.00)	LMASNMQ..AS..glPQATAPPR.PP
  134-  157 (22.85/ 6.95)	HMPHSNQvpPVsqgvPMVYQPAR..P
  179-  197 (25.21/ 8.35)	.MGAPMQ..PL....TYTYQPTSiPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.86|      16|      26|     368|     384|       4
---------------------------------------------------------------------------
  363-  379 (20.46/13.30)	SSTHDGSSNSVLsGA..........PL
  380-  405 (17.40/ 6.43)	PHNVENTSSSIV.GMqnggsstavvPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.83|      15|      17|      81|      95|       5
---------------------------------------------------------------------------
   81-   95 (32.79/21.57)	PPMPMQFRPVIPSQP
  101-  115 (27.95/17.06)	PPAAQQFRSVGEPMP
  121-  133 (22.09/11.60)	MPGQMPHFP.QPGQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      83.26|      16|      63|     408|     423|       6
---------------------------------------------------------------------------
  408-  423 (23.28/13.60)	STEVPLVATDAG....SSRN
  429-  444 (20.99/11.50)	SLTTGADAEDGT....SAED
  449-  467 (15.55/ 6.52)	KKTMP.VAGKINvtpvEEKT
  468-  483 (23.45/13.75)	SEEEPVVYATKM....EAKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09943 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKVARELAEKASNQQPDQESGIATSALVRSAAFEPSTAPANQSSSAVGIIASSTHDGSSNSVLSGAPLPHNVENTSSSIVGMQNGGSSTAVVPVAASTEVPLVATDAGSSRNNDENSSLTTGADAEDGTSAEDLEEAKKTMPVAGKINVTPVEEKTSEEEPVVYA
2) KERLREEEKHAHGSDSDSENRHKRHKKDRDSSRRNGAHELEDGELGEDGEIY
3) MQASGLPQATAPPRPPMMGSSAQPQNLGPPMPMQFRPVIPSQPPPQFVPPAAQQFRSVGEPMPGANVGMPGQMPHFPQPGQHMPHSNQVPPVSQGVPMVYQPARPMSSAPMQPQQQAAYAGGHLLT
4) SIPPVVQPWSTGPGQSVTHVPPLVQSGHQQVSAPTTLPPVNLSEPSSSDWQEHTAAEGKKYYYN
308
860
53
194
476
911
178
257










Molecular Recognition Features






MoRF SequenceStartStop




1) ENRHKRHKKDR
878
888