<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09921

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMNHDAAASSLYGLLGRPPAHASALAVAHPHDPAGGDAPPKQVAQAMERLGRAGRLIADIRLGADRLLEALFVSGDAPPYSVRQHVDRMEHIIVKEDAAMRLHFQDLRALGRKLVTVVWNCFALGLGLITLHTKICHGRQLEESGVLNGALKARGNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRCAQVFYNFELTHAFRLALKAFTDQKRRFFPHLEDEVVSHLHDGEPGGTKKPKLFTSNGDLEEKSLSDILKNLEHEASNIKIFTYWHLDWSKRASSLASLLDDDFVDPSKELNLQNMGKSRSGALTTSIDQVAVIELLVPSVFRAVVSLHPAGSTDPDAVAFFSPTERWIASYQTLFTKVCSKCGRLLMMDKSLALLLPPVHRPYHQTSNIGPDLQEAYHIGCSSYDG
Length419
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.156
Instability index35.83
Isoelectric point7.33
Molecular weight46001.06
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09921
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.86|      19|      57|     328|     349|       1
---------------------------------------------------------------------------
  328-  349 (30.02/22.85)	LLVPSVFRavvSLHPAGSTDPD
  387-  405 (37.84/21.46)	LLLPPVHR...PYHQTSNIGPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.29|      19|      59|      36|      56|       2
---------------------------------------------------------------------------
   36-   56 (28.82/22.21)	DAPPKQVAQAMERLGRagRLI
   75-   90 (24.29/11.57)	DAPPYSVRQHVDRMEH.....
   96-  114 (30.19/16.71)	DAAMRLHFQDLRALGR..KLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.47|      17|      26|     216|     232|       3
---------------------------------------------------------------------------
  216-  232 (30.13/20.45)	QKRRFFP...HLEDEVVSHL
  241-  260 (22.34/13.46)	KKPKLFTsngDLEEKSLSDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.62|      12|     236|     129|     140|       7
---------------------------------------------------------------------------
  129-  140 (25.12/18.73)	TLHTKICH..GRQL
  366-  379 (18.50/11.94)	TLFTKVCSkcGRLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09921 with Med27 domain of Kingdom Viridiplantae
Unable to open file!