<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09920

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMMQQPQAHASALAVAHPHDPAGGDAPPKQVAQAMERLGRAGRLIADIRLGADRLLEALFVSGDAPPYSVRQHVDRMEHIIVKEDAAMRLHFQDLRALGRQLEESGVLNGALKARGNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEVVSHLHDGEPGGTKKPKLFTSNGDLEEKSLSDILKNLEHEASNIKIFTYWHLDWSKRASSLASLLDDDFVDPSKELNLQNMGKSRSGALTTSIDQVAVIELLVPSVFRAVVSLHPAGSTDPDAVAFFSPTEGGSYLHARGTSVHNVFKHVKEHADKALQYFISVEPSKALPLLLRWIASYQTLFTKVCSKCGRLLMMDKSLALLLPPVHRPYHQTSNIGPDLQEAYHIGCSSYDG
Length408
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.249
Instability index37.72
Isoelectric point7.06
Molecular weight44830.61
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09920
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.99|      19|      44|      95|     113|       2
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   95-  113 (31.78/20.10)	RALGRQLEESGV..LNGALKA
  138-  158 (26.21/15.44)	RQLAGQAGASAVdrTRLALKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.33|      15|      37|      23|      37|       3
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   23-   37 (28.60/18.35)	GDAPPKQVAQAMERL
   62-   76 (30.73/20.22)	GDAPPYSVRQHVDRM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.37|      33|     130|     166|     203|       4
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  166-  203 (50.04/44.47)	FFPHLEDEvvSHLHdgePGGTKKPKLFTSNGDLEEKSL
  299-  331 (59.32/37.35)	FFSPTEGG..SYLH...ARGTSVHNVFKHVKEHADKAL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09920 with Med27 domain of Kingdom Viridiplantae
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