<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09919

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMMQQPQAHASALAVAHPHDPAGGDAPPKQVAQAMERLGRAGRLIADIRLGADRLLEALFVSGDAPPYSVRQHVDRMEHIIVKEDAAMRLHFQDLRALGRKLVTVVWNCFALGLGLITLHTKICHGRQLEESGVLNGALKARGNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRCAQVFYNFELTHAFRLALKAFTDQKRRFFPHLEDEVVSHLHDGEPGGTKKPKLFTSNGDLEEKSLSDILKNLEHEASNIKIFTYWHLDWSKRASSLASLLDDDFVDPSKELNLQNMGKSRSGALTTSIDQVAVIELLVPSVFRAVVSLHPAGSTDPDAVAFFSPTERWIASYQTLFTKVCSKCGRLLMMDKSLALLLPPVHRPYHQTSNIGPDLQEAYHIGCSSYDG
Length407
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.174
Instability index36.07
Isoelectric point7.32
Molecular weight44892.88
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09919
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.86|      19|      57|     316|     337|       1
---------------------------------------------------------------------------
  316-  337 (30.02/25.91)	LLVPSVFRavvSLHPAGSTDPD
  375-  393 (37.84/24.35)	LLLPPVHR...PYHQTSNIGPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.29|      19|      59|      24|      44|       2
---------------------------------------------------------------------------
   24-   44 (28.82/21.49)	DAPPKQVAQAMERLGRagRLI
   63-   78 (24.29/11.24)	DAPPYSVRQHVDRMEH.....
   84-  102 (30.19/16.19)	DAAMRLHFQDLRALGR..KLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.47|      17|      26|     204|     220|       3
---------------------------------------------------------------------------
  204-  220 (30.13/20.43)	QKRRFFP...HLEDEVVSHL
  229-  248 (22.34/13.45)	KKPKLFTsngDLEEKSLSDI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09919 with Med27 domain of Kingdom Viridiplantae
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