<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09912

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMPTQIPRAISTTEVPKTSSHAGGPMAAVAELERRVMAAVKASAERGDPPLLQAAEAARCIREAPAFTPGGLALSQALVANLCFAHNTAAMWKLLDQAMLSRLVDPLHTLALLTPRVVPNRREQPEAYMLYLELLGRYAVAPVYPERMENKDMLAKSIDGAMQLSHRFGFQHLDFGHTVILFVLSLVDMLIDCILDDCGLPVTSADEHGNRKDMNFNGKGRSFDRGDEHREHLRRKNILMSIEVVEKVTANKITQVFLRLVNRNTPENFNYLLRKLHLIGALKKKNALSPCNLLDSLIVNIQNAISTGYQLDRKRLLGVPVSIQPCSSAIYSIFVTGKGSCWIPFDMFMENAMDGRHLHTISSVEYLTELSKTLQVLNRATWQETFQALWISALRLVQRGPDASEGPFPHLDSRMCMLLAIIPLSIATIVKEEAGNLKGETTSVIRGQLVSSLQILRQFFGLLSPPPATVHLANAAARKAAVVLSNLKTGSENMYSSFKDSSSIKAVGNMLHLIVEACIARNLIDASAYFWPGYVVPLKESSPVQASPWSSLVEGSPLIELKDALMVTPASSVEELEKLYSFAVSGSPEEKLAASKILCGASLLRGWNIQEHVVQMVLKLLSTFLPLDSGSEGRYVQHMPMLHALVSGISSIDTVHILSLYGLVPEVASMLMPLCENFGSLPPSDHRSCKLEEASVYSVFSCAFLSLLRLWKFHRPPIESALSRRGVSVWSELRLDFLLLLRNSHSSLKNLSNVTQSSIFELDPPFQKPLYIDSFPKLRAWYFQNQACIASTLSSACSRTTVLHVANMILKIICHNKVPKGGVLSVNPQSTANSTTSSSPAGVQEDMCQWPTLPAWEILEAVPFVLEAMLTSCAHGRLSSRDLVTGLRDLADFLPASLAAIVSYFSAEVTSGIWKPVMLNGMDWPSPAATLPVVESEIKEALAFAGVHINICPRPRSAMPMLPLPIAALMSLSITVKMEEFSHLHGIISQGIEICATSSSWPTMQIIGALWSQKARRWHDFIILTCSQSPFTRDNTAVAQLIRSCFSSFLGPLVDGRSCSVANRGVANLLGQSSDEKAHRLAVAPGFLYMRSCRLFPNNTFVCEEILEVVIERAHALANDRSSDRPARLRSECLPLSAASSLVEQIASLAATMLCHAGGVNLIRLLYEQIMPTLLLSGGEAKLGSGGMVCSIIEGYTLAYVLLFSGATVWGVGETSPAYTLIYTSKRQRVLDRHLEFMARVMEGNIVLGCGDATWRSYVLCFVNLLVSFVPAWVPEVKLNTLQKLASGLRRWHEGDLALSLLELGGAKTVTSVVESLLR
Length1318
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.166
Instability index51.99
Isoelectric point8.00
Molecular weight144544.41
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09912
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     245.16|     101|     340|     641|     822|       1
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  570-  620 (24.05/21.09)	..................................................................................................SSVEELEKLYsfavsgspeeklaaSKILCGASL..LRGWNIQEH..................VVQMVLKLL
  664-  812 (132.19/194.05)	PEVASMLMPLceNFGSLpPSDHRSCKLEEAS.VYSVFS.....CAFLSllrLWKFHRppIESALSRRGVSVWSelrlDFLLLlrnshsslknlsnvtqSSIFELDPPF..............QKPLYIDSFpkLRAWYFQNQaciastlssacsrttvlhVANMILKII
  954- 1023 (88.92/35.34)	PRSAMPMLPL..PIAAL.MSLSITVKMEEFShLHGIISqgieiCATSS...SWPTMQ..IIGALWSQKARRWH....DFIIL.......................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.87|      51|    1129|      20|     185|       3
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  130-  185 (78.48/162.97)	YLELLGRYAVAPVyPE.RMENKDMLAKSI....DGAMQLShrfgFQHLDFGHTVILFVLSL
 1261- 1316 (73.39/ 7.30)	FVNLLVSFVPAWV.PEvKLNTLQKLASGLrrwhEGDLALS....LLELGGAKTVTSVVESL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.43|      22|     222|     403|     428|       7
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  403-  428 (32.71/30.03)	SEGPFPHldsRMCMLLAIIPlSIATI
  630-  651 (40.72/23.70)	SEGRYVQ...HMPMLHALVS.GISSI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09912 with Med33 domain of Kingdom Viridiplantae
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