<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09911

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMFMENAMDGRHLHTISSVEYLTELSKTLQVLNRATWQETFQALWISALRLVQRGPDASEGPFPHLDSRMCMLLAIIPLSIATIVKEEAGNLKGETTSVIRGQLVSSLQILRQFFGLLSPPPATVHLANAAARKAAVVLSNLKTGSENMYSSFKDSSSIKAVGNMLHLIVEACIARNLIDASAYFWPGYVVPLKESSPVQASPWSSLVEGSPLIELKDALMVTPASSVEELEKLYSFAVSGSPEEKLAASKILCGASLLRGWNIQEHVVQMVLKLLSTFLPLDSGSEGRYVQHMPMLHALVSGISSIDTVHILSLYGLVPEVASMLMPLCENFGSLPPSDHRSCKLEEASVYSVFSCAFLSLLRLWKFHRPPIESALSRRGVSVWSELRLDFLLLLRNSHSSLKNLSNVTQSSIFELDPPFQKPLYIDSFPKLRAWYFQNQACIASTLSSACSRTTVLHVANMILKIICHNKVPKGGVLSVNPQSTANSTTSSSPAGVQEDMCQWPTLPAWEILEAVPFVLEAMLTSCAHGRLSSRDLVTGLRDLADFLPASLAAIVSYFSAEVTSGIWKPVMLNGMDWPSPAATLPVVESEIKEALAFAGVHINICPRPRSAMPMLPLPIAALMSLSITVKMEEFSHLHGIISQGIEICATSSSWPTMQIIGALWSQKARRWHDFIILTCSQSPFTRDNTAVAQLIRSCFSSFLGPLVDGRSCSVANRGVANLLGQSSDEKAHRLAVAPGFLYMRSCRLFPNNTFVCEEILEVVIERAHALANDRSSDRPARLRSECLPLSAASSLVEQIASLAATMLCHAGGVNLIRLLYEQIMPTLLLSGGEAKLGSGGMVCSIIEGYTLAYVLLFSGATVWGVGETSPAYTLIYTSKRQRVLDRHLEFMARVMEGNIVLGCGDATWRSYVLCFVNLLVSFVPAWVPEVKLNTLQKLASGLRRWHEGDLALSLLELGGAKTVTSVVESLLR
Length973
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.241
Instability index57.01
Isoelectric point6.92
Molecular weight106299.33
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09911
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     857.39|     281|     318|      31|     336|       1
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   31-  336 (429.33/390.61)	LNRATWQETFQALWISALRL..VQRGPDAS....EGP..FPHLdsRMCMLLaIIPLSIATIvkeeaGNLKGETTSVI........RGQLVSSLQILRQFFgLLSPPPATVHLANAAARKAAVVLSN..LKTGSEN.MYSSFKDSSSIKAVGNMLHLIVEACIARNLIDasayfWPgyVVP...LKESSP.VQASPWSSLVEG....SPLIE.LKDALMVTPAsSVEELEKLYSFAVSGSPEEKLaaskILCGASllrgWNIQE...HVVQMVLKLLSTFLPLDSGSEGRYVQHMPMLHALVSGISSIDTVHILSLYGLVPEVASMLMPLCENFGSLP
  345-  656 (428.05/319.78)	LEEASVYSVFSCAFLSLLRLwkFHRPPIESalsrRGVsvWSEL..RLDFLL.LLRNSHSSL.....KNLSNVTQSSIfeldppfqKPLYIDSFPKLRAWY.FQNQACIASTLSSACSRTTVLHVANmiLKIICHNkVPKGGVLSVNPQSTANSTTSSSPAGVQEDMCQ.....WP..TLPaweILEAVPfVLEAMLTSCAHGrlssRDLVTgLRDLADFLPA.SLAAIVSYFSAEVTSGIWKPV....MLNGMD....WPSPAatlPVVESEIKEALAFAGVHINICPRPRSAMPMLPLPIAALMSLSITVKMEEFSHLHGIISQGIEICATSSSWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.41|      26|      33|     711|     736|       2
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  689-  708 (24.58/11.42)	........NTAVAQLIRSCFSSFLGPLV
  711-  736 (42.48/24.73)	RSCSV..ANRGVANLLGQSSDEKAHRLA
  745-  772 (38.35/21.66)	RSCRLfpNNTFVCEEILEVVIERAHALA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09911 with Med33 domain of Kingdom Viridiplantae
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