<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09909

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMPTQIPRAISTTEVPKTSSHAGGPMAAVAELERRVMAAVKASAERGDPPLLQAAEAARCIREAPAFTPGGLALSQALVANLCFAHNTAAMWKLLDQAMLSRLVDPLHTLALLTPRVVPNRREQPEAYMLYLELLGRYAVAPVYPERMENKDMLAKSIDGAMQLSHRFGFQHLDFGHTVILFVLSLVDMLIDCILDDCGLPVTSADEHGNRKDMNFNGKGRSFDRGDEHREHLRRKNILMSIEVVEKVTANKITQVFLRLVNRNTYDDRPENFNYLLRKLHLIGALKKKNALSPCNLLDSLIVNIQNAISTGYQLDRKRLLGVPVSIQPCSSAIYSIFVTGKGSCWIPFDMFMENAMDGRHLHTISSVEYLTELSKTLQVLNRATWQETFQALWISALRLVQRGPDASEGPFPHLDSRMCMLLAIIPLSIATIVKEEAGNLKGETTSVIRGQLVSSLQILRQFFGLLSPPPATVHLANAAARKAAVVLSNLKTGSENMYSSFKDSSSIKAVGNMLHLIVEACIARNLIDASAYFWPGYVVPLKESSPVQASPWSSLVEGSPLIELKDALMVTPASSVEELEKLYSFAVSGSPEEKLAASKILCGASLLRGWNIQEHVVQMVLKLLSTFLPLDSGSEGRYVQHMPMLHALVSGISSIDTVHILSLYGLVPEVASMLMPLCENFGSLPPSDHRSCKLEEASVYSVFSCAFLSLLRLWKFHRPPIESALSRRGVSVWSELRLDFLLLLRNSHSSLKNLSNVTQSSIFELDPPFQKPLYIDSFPKLRAWYFQNQACIASTLSSACSRTTVLHVANMILKIICHNKVPKGGVLSVNPQSTANSTTSSSPAGVQEDMCQWPTLPAWEILEAVPFVLEAMLTSCAHGRLSSRDLVTGLRDLADFLPASLAAIVSYFSAEVTSGIWKPVMLNGMDWPSPAATLPVVESEIKEALAFAGVHINICPRPRSAMPMLPLPIAALMSLSITVKMEEFSHLHGIISQGIEICATSSSWPTMQIIGALWSQKARRWHDFIILTCSQSPFTRDNTAVAQLIRSCFSSFLGPLVDGRSCSVANRGVANLLGQSSDEKAHRLAVAPGFLYMRSCRLFPNNTFVCEEILEVVIERAHALANDRSSDRPARLRSECLPLSAASSLVEQIASLAATMLCHAGGVNLIRLLYEQIMPTLLLSGGEAKLGSGGMVCSIIEGYTLAYVLLFSGATVWGVGETSPAYTLIYTSKRQRVLDRHLEFMARVMEGNIVLGCGDATWRSYVLCFVNLLVSFVPAWVPEVKLNTLQKLASGLRRWHEGDLALSLLELGGAKTVTSVVESLLR
Length1322
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.156
Instability index52.14
Isoelectric point7.87
Molecular weight145093.95
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09909
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.00|      27|      32|     685|     712|       1
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  685-  712 (45.19/29.73)	PPSDHRSCKlEEASVYSVFSCAFLSLLR
  719-  745 (46.80/26.61)	PPIESALSR.RGVSVWSELRLDFLLLLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.41|      26|      33|    1060|    1085|       2
---------------------------------------------------------------------------
 1038- 1057 (24.58/12.21)	........NTAVAQLIRSCFSSFLGPLV
 1060- 1085 (42.48/26.55)	RSCSV..ANRGVANLLGQSSDEKAHRLA
 1094- 1121 (38.35/23.23)	RSCRLfpNNTFVCEEILEVVIERAHALA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     439.31|     142|     222|     311|     466|       3
---------------------------------------------------------------------------
  311-  466 (221.09/193.69)	GYQLDRKRllGVPVSIQPCSSAIY.SIFVTGKGSCWI.PFDMFMEnaMDGRHLHTIS.SVEYLTELSKTL..QVLNRAtW..QETFQALWISALRLVQRGPDASEGPFPHldsRMCMLLAIIPlSIATIVKEEAGNLKGettsvIRGQLVSSLQILRQFFGLL
  536-  684 (218.21/152.62)	GYVVPLKE..SSPVQASPWSSLVEgSPLIELKDALMVtPASSVEE..LEKLYSFAVSgSPEEKLAASKILcgASLLRG.WniQEHVVQMVLKLLSTFLPLDSGSEGRYVQ...HMPMLHALVS.GISSIDTVHILSLYG.....LVPEVASMLMPLCENFGSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     317.84|     101|    1133|      20|     185|       4
---------------------------------------------------------------------------
   60-  179 (146.33/196.96)	IREAPAFTPGGLAlsqALVANLCfAHNTAAMWKlldQAMLSRLVDPlhTLALLTPrVVPNRREQPEAYM.LYLEllgryavapVYPERMENKDMLAKSIDGAMQLSHRFGFQHLDFGHTVI
  890-  991 (171.51/92.22)	LRDLADFLPASLA...AIVSYFS.AEVTSGIWK...PVMLNGMDWP..SPAATLP.VVESEIKEALAFAgVHIN.........ICPRPRSAMPMLPLPIAALMSLSITVKMEEFSHLHGII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.06|      40|     283|     836|     879|       7
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  836-  879 (60.80/43.62)	NSTTSSSPAGVQEDmCqWPTLPAWEILEAVPFVLEAMLtsCAHG
 1122- 1161 (68.26/35.27)	NDRSSDRPARLRSE.C.LPLSAASSLVEQIASLAATML..CHAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09909 with Med33 domain of Kingdom Viridiplantae
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