<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09908

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMLMPLCENFGSLPPSDHRSCKLEEASVYSVFSCAFLSLLRLWKFHRPPIESALSRRGVSVWSELRLDFLLLLRNSHSSLKNLSNVTQSSIFELDPPFQKPLYIDSFPKLRAWYFQNQACIASTLSSACSRTTVLHVANMILKIICHNKVPKGGVLSVNPQSTANSTTSSSPAGVQEDMCQWPTLPAWEILEAVPFVLEAMLTSCAHGRLSSRDLVTGLRDLADFLPASLAAIVSYFSAEVTSGIWKPVMLNGMDWPSPAATLPVVESEIKEALAFAGVHINICPRPRSAMPMLPLPIAALMSLSITVKMEEFSHLHGIISQGIEICATSSSWPTMQIIGALWSQKARRWHDFIILTCSQSPFTRDNTAVAQLIRSCFSSFLGPLVDGRSCSVANRGVANLLGQSSDEKAHRLAVAPGFLYMRSCRLFPNNTFVCEEILEVVIERAHALANDRSSDRPARLRSECLPLSAASSLVEQIASLAATMLCHAGGVNLIRLLYEQIMPTLLLSGGEAKLGSGGMVCSIIEGYTLAYVLLFSGATVWGVGETSPAYTLIYTSKRQRVLDRHLEFMARVMEGNIVLGCGDATWRSYVLCFVNLLVSFVPAWVPEVKLNTLQKLASGLRRWHEGDLALSLLELGGAKTVTSVVESLLR
Length650
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy0.242
Instability index62.15
Isoelectric point8.03
Molecular weight71219.03
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09908
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.00|      27|      32|      13|      40|       1
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   13-   40 (45.19/28.71)	PPSDHRSCKlEEASVYSVFSCAFLSLLR
   47-   73 (46.80/25.74)	PPIESALSR.RGVSVWSELRLDFLLLLR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.41|      26|      33|     388|     413|       2
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  366-  385 (24.58/12.38)	........NTAVAQLIRSCFSSFLGPLV
  388-  413 (42.48/26.54)	RSCSV..ANRGVANLLGQSSDEKAHRLA
  422-  449 (38.35/23.27)	RSCRLfpNNTFVCEEILEVVIERAHALA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.59|      18|      36|     537|     554|       5
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  537-  554 (33.80/18.21)	GATVWGVGETS.PAYTLIY
  575-  593 (29.79/15.34)	GNIVLGCGDATwRSYVLCF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.51|      28|     209|     246|     295|       6
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  188-  227 (36.95/49.29)	EILEAVPFvleamltSCAHGRLSSRDlvtglRDLADFLPA
  268-  295 (51.56/23.79)	EIKEALAF.......AGVHINICPRP.....RSAMPMLPL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09908 with Med33 domain of Kingdom Viridiplantae
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