<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09905

Description Uncharacterized protein
SequenceMADAEDMQPLVCDNRTGMVKAGFAGDDALRAVFPSIVGRPRHIGVMVEMGQKDAYVGDEVQSKRGILTLKYLSLHITLFPTLQQSVQQSEHLFRDSCNDMGSVNEVPAQPIYIDSFPKLRAWFCKPIMTKPKVALKPQTLSPQPEAQAPHDPQTPEQQQSGTGVGMARIMNDMKISGDDAKSSNGEAARGGSNGGEKQGDESNGGGILSAVASRIGVVVSGANGDRSGSAEDGAKTSAGDAGHGSKGEEKGRGVNGGRIVEQIISNLPSGI
Length271
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.04
Grand average of hydropathy-0.460
Instability index45.00
Isoelectric point5.77
Molecular weight28442.59
Publications
PubMed=19965430

Function

Annotated function Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. 
ECO:0000256	ARBA:ARBA00003589
GO - Cellular Component
cytoskeleton	GO:0005856	IEA:UniProtKB-SubCell
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09905
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.38|      49|      51|     163|     213|       1
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  163-  213 (81.49/42.67)	GVGMARIMNDMKISGDD.AKSSNGEAARGGSngGEKQGDESNGGGILSAVAS
  216-  265 (80.90/37.50)	GVVVSGANGDRSGSAEDgAKTSAGDAGHGSK..GEEKGRGVNGGRIVEQIIS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09905 with Med33 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VALKPQTLSPQPEAQAPHDPQTPEQQQSGTGVGMARIMNDMKISGDDAKSSNGEAARGGSNGGEKQGDESNGGGILSA
2) VVSGANGDRSGSAEDGAKTSAGDAGHGSKGEEKGRGVNGGRIVEQI
133
218
210
263










Molecular Recognition Features






MoRF SequenceStartStop




NANANA