<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09904

Description Putative ribosomal protein S4 (RPS4A) family protein
SequenceMVGLPRRLSRDSRVLMIYKSLLYGKLAGNMLHLIEACILRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKVSRLSGPLIDALVASPASRCFKLCKVRSVQFGQKGISYLNTYDGRTIRYPDLLIKANDTIKIDLETNKIMDFFKFDVSNVFMVTGGRNTRRVGVIKNWEKHKASFEVIDVLLGAFCMLCLVFSYLLYKKT
Length206
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.11
Grand average of hydropathy0.130
Instability index32.43
Isoelectric point9.71
Molecular weight23415.51
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
cytosolic small ribosomal subunit	GO:0022627	IBA:GO_Central
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central
rRNA binding	GO:0019843	IEA:UniProtKB-KW
structural constituent of ribosome	GO:0003735	IBA:GO_Central

GO - Biological Process
translation	GO:0006412	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09904
No repeats found




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09904 with Med33 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA