<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09900

Description Retrovirus-related Pol polyprotein LINE-1
SequenceMGYEDDDVSLDGQVVPKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDHRVPRKLKGKFYRTAIRPAMLYGAECWPTKRRHVQQLSVAEMRMLRWICGHTRRDRVRNDDIRERVGVAPIEEKLMQHRLRWFGHIQRRPEEAPVHIGIIRRPENVKRVFGMGATNSSTMGMQQQQQGVYGNMQAGAQNVQSMAGLQNQTQNPNFTQQIQQNQQ
Length222
PositionHead
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.835
Instability index58.45
Isoelectric point10.00
Molecular weight25764.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09900
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.09|      19|      21|     167|     185|       1
---------------------------------------------------------------------------
  167-  185 (38.53/24.11)	VFG.M..GATNSSTM.GMQQQQQ
  187-  209 (22.56/11.43)	VYGnMqaGAQNVQSMaGLQNQTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.68|      21|      21|     109|     129|       2
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   87-  106 (25.96/13.00)	.TKRRHVQ.QLSVAEMRMLRWI
  109-  129 (34.57/19.40)	HTRRDRVR.NDDIRERVGVAPI
  132-  153 (29.15/15.37)	KLMQHRLRwFGHIQRRPEEAPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.60|      20|      21|      29|      48|       3
---------------------------------------------------------------------------
   29-   48 (34.68/21.27)	QKEGDI.DEDVSHRIKAGWLK
   51-   71 (29.92/17.58)	QAAGVLcDHRVPRKLKGKFYR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09900 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RVFGMGATNSSTMGMQQQQQGVYGNMQAGAQNVQSMAGLQNQTQNPNFTQQIQQNQQ
166
222










Molecular Recognition Features






MoRF SequenceStartStop




1) DTFRYLG
19
25