<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09895

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMTSSASPNPSPVPVPTPITTANGTTSSPKDQPPPPPPLPQQQQQQGGGQEEAEAADGGGAEAAEAGVLAGVAAEAMEVDGGSGAGDAEAGGSVGGGVGAGAGGGAQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPVNLVRDASLWQCEHEWRQDLSVVTKWLSGISPYRWLPTNSTSSNLKTFEEKFLTQQPQSAVGWPSILCVCSVFSSGSVQLHWSQWPSQNSAHSRWFSTSKGLLGAGPSGIMAADAIVTESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINAASSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEGAQTKKLTDNNETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEAGVYLLFDDFRLLLAGQYMSPYDPDEGPSITGWRVQCWESSCQPVVLHPIFGSPTSLGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKISSAAWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALTNPSTLLPEPWQASSDMLSSIDADKMTVEPALLPNIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPSPSNNQGNQGGSTSATGNSQMQEWVQGAIAKISNNSDGAATATQNPMSTRTSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLASSQKNQDSAMQKIQHMMNAKTEDNSSTVRSGLGAAKVEEGHSARGGQFVLGGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSSSIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPRLKISGSINSHLSDMEVDAVSSIGIDLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVVTAVWRTGLDGDWYKVSMVMVALPFAVKSGFIVP
Length1260
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.184
Instability index49.01
Isoelectric point6.03
Molecular weight135048.92
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09895
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.44|      30|      45|     341|     385|       1
---------------------------------------------------------------------------
   97-  149 (33.52/ 7.27)	VGAGAGGGAQqaspATVfRIRLKQS.PASLrhkmrvpelcrnfssnsSPPFWiP
  349-  379 (55.92/34.98)	VMPGLGNGIQ....ATA.KINAASSvPPSL.................NPPSW.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.73|      20|      21|      46|      66|       2
---------------------------------------------------------------------------
   46-   66 (34.12/24.76)	GGGQEEAEAaDGG.GAEAAEAG
   70-   90 (32.61/18.73)	GVAAEAMEV.DGGsGAGDAEAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.39|      17|      21|     855|     873|       3
---------------------------------------------------------------------------
  855-  872 (26.17/10.87)	PSSTTGtSRNMVTSPTNS
  876-  892 (31.22/11.38)	PSNNQG.NQGGSTSATGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.72|      12|      21|       6|      18|       4
---------------------------------------------------------------------------
    6-   18 (21.59/10.80)	SPNPSPvPVPTPI
   27-   38 (27.13/10.56)	SPKDQP.PPPPPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.62|      18|      20|     271|     288|       5
---------------------------------------------------------------------------
  271-  288 (34.77/21.60)	WPSILCVCSVFSSGSVQL
  293-  310 (35.85/22.54)	WPSQNSAHSRWFSTSKGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.40|      43|     112|     800|     846|       6
---------------------------------------------------------------------------
  800-  845 (65.50/56.86)	SDMLSSIDADKMTVEPALLP...NI...QGyVDAVL...DlaSHFITRLRRYASF
  910-  961 (62.90/41.69)	SDGAATATQNPMSTRTSFMPisiNTgtfPG.TPAVRligD..CHFLHRLCQLLLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.43|       9|      45|    1109|    1118|       7
---------------------------------------------------------------------------
 1109- 1118 (16.07/12.67)	LGPhMQNMPR
 1157- 1165 (20.36/10.45)	FGP.LDNMPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.35|      22|      31|     636|     663|       8
---------------------------------------------------------------------------
  636-  657 (42.80/25.31)	PPAFSSSSCCLAS.VWHDTLKDR
  667-  689 (34.54/10.86)	PPAILSTQTKISSaAWERAIADR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.82|      29|     284|     189|     269|       9
---------------------------------------------------------------------------
  153-  185 (49.77/88.84)	LNPER..PTECSVFNVKADSPRdfvqFIEWSPRSC
  238-  268 (46.05/15.89)	ISPYRwlPTNSTSSNLKTFEEK....FLTQQPQSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.03|      25|      32|     485|     511|      10
---------------------------------------------------------------------------
  485-  510 (43.87/27.82)	YMSPYD.PDEGPSITGWRVQCwESSCQ
  518-  543 (41.16/20.26)	FGSPTSlGGQPPMQTVWSTRV.NKSIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.31|      16|     116|     605|     622|      11
---------------------------------------------------------------------------
  605-  622 (26.03/22.14)	VAFLRGGVHifSGPNFDQ
  722-  737 (30.27/18.26)	IAFLDADFH..SLPTMQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09895 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLASSQKNQDSAMQKIQHMMNAKTEDNSSTVRSGLGAAK
2) MTSSASPNPSPVPVPTPITTANGTTSSPKDQPPPPPPLPQQQQQQGGGQEEAEAADGGGAEAAEAGVLAGVAAEAMEVDGGSGAGDAEAGGSVGGGVGAGAGGGAQQASPATVFRIR
3) SSTTGTSRNMVTSPTNSSPSPSNNQGNQGGSTSATGNSQ
973
1
856
1011
117
894










Molecular Recognition Features






MoRF SequenceStartStop




1) FRIRLK
114
119