<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09893

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMNVQLYMQNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALTNPSTLLPEPWQASSDMLSSIDADKMTVEPALLPNIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPSPSNNQGNQGGSTSATGNSQMQEWVQGAIAKISNNSDGAATATQNPMSTRTSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLASSQKNQDSAMQKIQHMMNAKTEDNSSTVRSGLGAAKVEEGHSARGGQFVLGGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSSSIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPRLKISGSINSHLSDMEVDAVSSIGIDLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVVTAVWRTGLDGDWYKCIRCLRQTCAFAHPGAPNQTNEREAWWISRWSHACPMCGGSWVKVV
Length552
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.298
Instability index42.77
Isoelectric point8.72
Molecular weight60163.79
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09893
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     316.31|      99|     113|      76|     187|       1
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   79-  143 (97.40/60.11)	...............................................EPALLP...NIQ.GY..V.DAV.LDLASHFITRLRRYASFC.........RTL.A.SHVGPSSTTGTSRNMVTSPT..NSSPSPSN
  144-  271 (133.04/98.77)	NQGN..QGGSTSATGNSQMQEWVQGAIAKISNNSDGaatatqnpmstRTSFMPisiNTG.TFpgT.PAVrLIGDCHFLHRLCQLLLFCllfrrrqspRLL.AsSQKNQDSAMQKIQHMMNAKTedNSSTVRSG
  278-  351 (85.87/51.19)	EEGHsaRGGQFVLGGAKGPEENPIGKSVRIGSGNAG.......................qGY..TsDEV.KVLFLILVDLCRRTSTLP.........HPLpA.SQVGSSS.......................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.43|       9|      45|     374|     383|       2
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  374-  383 (16.07/13.76)	LGPhMQNMPR
  422-  430 (20.36/11.43)	FGP.LDNMPR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.54|      40|      44|     431|     470|       3
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  431-  470 (69.33/49.27)	LKISGSINSHLSDM..EVDAVSSI...GID.LWPRKRRLSERDAAF
  472-  517 (57.21/39.35)	LKTSVGLGGYLGVMgsRRDVVTAVwrtGLDgDWYKCIRCLRQTCAF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09893 with Med16 domain of Kingdom Viridiplantae
Unable to open file!