<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09892

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMTSSASPNPSPVPVPTPITTANGTTSSPKDQPPPPPPLPQQQQQQGGGQEEAEAADGGGAEAAEAGVLAGVAAEAMEVDGGSGAGDAEAGGSVGGGVGAGAGGGAQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPVNLVRDASLWQCEHEWRQDLSVVTKWLSGISPYRWLPTNSTSSNLKTFEEKFLTQQPQSAVGWPSILCVCSVFSSGSVQLHWSLCAWWTICSWWCKGS
Length329
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy-0.249
Instability index62.55
Isoelectric point6.52
Molecular weight34929.94
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09892
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.40|      13|      18|     294|     308|       1
---------------------------------------------------------------------------
  294-  308 (24.03/16.31)	WPsiLC....VCSVFSSGS
  313-  329 (27.37/12.94)	WS..LCawwtICSWWCKGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.85|      23|      23|      51|      73|       2
---------------------------------------------------------------------------
   47-   66 (31.47/16.66)	...GGQEEAEAAD..GG.GAEAAEAG
   67-   90 (37.96/21.43)	VLAGVAAEAMEVD..GGsGAGDAEAG
   93-  108 (17.42/ 6.35)	VGGGVGA......gaGG.GAQQA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.08|      26|     193|      10|      36|       3
---------------------------------------------------------------------------
   10-   36 (47.30/24.43)	SPVPVPTPITTAN..GTTsSPKDQPPPPP
  204-  231 (41.78/17.94)	SPRSCPRALLVANfhGRI.TIWTQPTKGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09892 with Med16 domain of Kingdom Viridiplantae
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