<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09891

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPVNLVRDASLWQCEHEWRQDLSVVTKWLSGISPYRWLPTNSTSSNLKTFEEKFLTQQPQSAVGWPSILCVCSVFSSGSVQLHWSQWPSQNSAHSRWFSTSKGLLGAGPSGIMAADAIVTESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINAASSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEGAQTKKLTDNNETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSCQPVVLHPIFGSPTSLGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKISSAAWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALTNPSTLLPEPWQASSDMLSSIDADKMTVEPALLPNIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPSPSNNQGNQGGSTSATGNSQMQEWVQGAIAKISNNSDGAATATQNPMSTRTSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLASSQKNQDSAMQKIQHMMNAKTEDNSSTVRSGLGAAKVEEGHSARGGQFVLGGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSSSIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPRLKISGSINSHLSDMEVDAVSSIGIDLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVVTAVWRTGLDGDWYKCIRCLRQTCAFAHPGAPNQTNEREAWWISRWSHACPMCGGSWVKVV
Length1167
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy-0.189
Instability index46.18
Isoelectric point6.72
Molecular weight126813.18
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09891
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.22|      18|      19|     735|     753|       1
---------------------------------------------------------------------------
  189-  202 (22.02/ 6.72)	PSQNSAHSRWFSTS....
  735-  752 (31.98/15.66)	PSSTTGTSRNMVTSPTNS
  756-  772 (31.22/16.36)	PSNNQG.NQGGSTSATGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.40|      43|     111|     680|     726|       2
---------------------------------------------------------------------------
  680-  725 (65.50/43.27)	SDMLSSIDADKMTVEPALLP...NI...QGyVDAVL...DlaSHFITRLRRYASF
  790-  841 (62.90/31.73)	SDGAATATQNPMSTRTSFMPisiNTgtfPG.TPAVRligD..CHFLHRLCQLLLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.67|      15|     112|     485|     502|       4
---------------------------------------------------------------------------
  485-  500 (22.72/18.77)	VAFLRGGVHIfSGPNF
  505-  519 (26.95/10.13)	SYHVNVGSAI.APPAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.82|      11|      22|     573|     583|       8
---------------------------------------------------------------------------
  573-  583 (21.69/10.74)	SLLAGVDWWDA
  597-  607 (17.12/ 6.95)	SLNSVIAFLDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.43|       9|      45|     989|     998|      10
---------------------------------------------------------------------------
  989-  998 (16.07/15.59)	LGPhMQNMPR
 1037- 1045 (20.36/12.86)	FGP.LDNMPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.33|      32|     122|     893|     953|      11
---------------------------------------------------------------------------
  351-  387 (58.28/23.54)	RGGSvitvvIVEGQYMSPYDPDEGPSI...TGWRVQCWES
  899-  933 (53.05/58.77)	RGGQ.....FVLGGAKGPEENPIGKSVrigSGNAGQGYTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.25|      26|     937|      74|      99|      13
---------------------------------------------------------------------------
   74-   99 (51.60/26.40)	EWSPRSCPRALLVANFHGRITIWTQP
  388-  408 (33.97/14.96)	.....SCQPVVLHPIFGSPTSLGGQP
 1020- 1034 (34.69/15.42)	EWHRRN........MFGGP...WSEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.72|      40|     578|     529|     572|      15
---------------------------------------------------------------------------
  529-  572 (64.03/45.67)	VWHDTLkDRTILKIIRVLPPAILSTQTKISSAAWERaiaDRFW...W
 1110- 1152 (77.69/44.24)	VWRTGL.DGDWYKCIRCLRQTCAFAHPGAPNQTNER...EAWWisrW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09891 with Med16 domain of Kingdom Viridiplantae
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