<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09889

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMTSSASPNPSPVPVPTPITTANGTTSSPKDQPPPPPPLPQQQQQQGGGQEEAEAADGGGAEAAEAGVLAGVAAEAMEVDGGSGAGDAEAGGSVGGGVGAGAGGGAQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPVNLVRDASLWQCEHEWRQDLSVVTKWLSGISPYRWLPTNSTSSNLKTFEEKFLTQQPQSAVGWPSILCVCSVFSSGSVQLHWSQWPSQNSAHSRWFSTSKGLLGAGPSGIMAADAIVTESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINAASSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEGAQTKKLTDNNETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSCQPVVLHPIFGSPTSLGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKISSAAWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALTNPSTLLPEPWQASSDMLSSIDADKMTVEPALLPNIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPSPSNNQGNQGGSTSATGNSQMQEWVQGAIAKISNNSDGAATATQNPMSTRTSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLASSQKNQDSAMQKIQHMMNAKTEDNSSTVRSGLGAAKVEEGHSARGGQFVLGGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSSSIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPRLKISGSINSHLSDMEVDAVSSIGIDLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVVTAVWRTGLDGDWYKCIRCLRQTCAFAHPGAPNQTNEREAWWISRWSHACPMCGGSWVKVV
Length1295
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.217
Instability index49.40
Isoelectric point6.29
Molecular weight138911.15
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09889
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.62|      33|      45|     433|     477|       1
---------------------------------------------------------------------------
  445-  477 (56.87/43.24)	VSNFS.........AYVSPEAAAQSATTTT.....WGSGVTSVAFDP
  478-  524 (50.74/18.54)	TRGGSvitvvivegQYMSPYDPDEGPSITGwrvqcWESSCQPVVLHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.39|      20|      25|      50|      73|       2
---------------------------------------------------------------------------
   46-   66 (33.53/14.97)	GGGQEEAEAaDGG.GAEAAEAG
   70-   90 (33.85/17.34)	GVAAEAMEV.DGGsGAGDAEAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.39|      17|      19|     863|     881|       3
---------------------------------------------------------------------------
  863-  880 (26.17/11.50)	PSSTTGtSRNMVTSPTNS
  884-  900 (31.22/12.03)	PSNNQG.NQGGSTSATGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.16|      43|     112|     808|     854|       4
---------------------------------------------------------------------------
  808-  853 (64.33/47.22)	SDMLSSIDADKMT....VEP.....ALLPNIQGyVDAVLDlaSHFITRLRRYASF
  918-  969 (66.82/38.13)	SDGAATATQNPMStrtsFMPisintGTFPGTPA.VRLIGD..CHFLHRLCQLLLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.68|      42|      44|     224|     266|       5
---------------------------------------------------------------------------
  225-  266 (77.02/41.05)	TQPTKGPVNLVRDASLWQCEHE...WRQDLSVVTKWLSGISPYRW
  269-  313 (69.66/31.80)	TNSTSSNLKTFEEKFLTQQPQSavgWPSILCVCSVFSSGSVQLHW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.35|      22|      30|     644|     665|       6
---------------------------------------------------------------------------
  644-  665 (42.80/32.79)	PPAFSSSSCCLAS.VWHDTLKDR
  675-  697 (34.54/24.61)	PPAILSTQTKISSaAWERAIADR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.88|      13|      25|       3|      15|       8
---------------------------------------------------------------------------
    3-   15 (26.05/ 9.80)	SSASPN...PSPVPVP
   24-   39 (22.83/ 7.71)	TTSSPKdqpPPPPPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.57|      23|      26|     535|     558|       9
---------------------------------------------------------------------------
  535-  558 (40.46/26.01)	QPPMQTVWSTR.........VNK.SIPPtEDLKN
  562-  594 (33.11/16.42)	YVPMPTTSDERsssecsvdrANRlSFDP.YDLPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.43|       9|      45|    1117|    1126|      10
---------------------------------------------------------------------------
 1117- 1126 (16.07/14.19)	LGPhMQNMPR
 1165- 1173 (20.36/11.70)	FGP.LDNMPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.03|      12|      26|     130|     143|      11
---------------------------------------------------------------------------
  130-  143 (20.65/13.38)	RVPelCRNFSAVAW
  159-  170 (25.38/11.54)	RIP..SSNSSPPFW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.37|      12|      18|     333|     350|      14
---------------------------------------------------------------------------
  338-  358 (10.20/15.12)	PSGImaadaIVTEsgalHVAG
  364-  379 (18.17/ 7.84)	PSTV.....VVWEvmpgLGNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.02|      40|      44|    1174|    1213|      15
---------------------------------------------------------------------------
 1174- 1213 (68.83/50.04)	LKISGSINSHLSDM..EVDAVSSI...GID.LWPRKRRLSERDAAF
 1215- 1260 (59.19/41.86)	LKTSVGLGGYLGVMgsRRDVVTAVwrtGLDgDWYKCIRCLRQTCAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.31|      16|     115|     613|     630|      16
---------------------------------------------------------------------------
  613-  630 (26.03/18.12)	VAFLRGGVHifSGPNFDQ
  730-  745 (30.27/14.95)	IAFLDADFH..SLPTMQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09889 with Med16 domain of Kingdom Viridiplantae
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