<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09887

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMTSSASPNPSPVPVPTPITTANGTTSSPKDQPPPPPPLPQQQQQQGGGQEEAEAADGGGAEAAEAGVLAGVAAEAMEVDGGSGAGDAEAGGSVGGGVGAGAGGGAQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPVNLVRDASLWQCEHEWRQDLSVVTKWLSGISPYRWLPTNSTSSNLKTFEEKFLTQQPQSAVGWPSILCVCSVFSSGSVQLHWSQWPSQNSAHSRWFSTSKGLLGAGPSGIMAADAIVTESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINAASSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEGAQTKKLTDNNETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEAGVYLLFDDFRLLLAGQYMSPYDPDEGPSITGWRVQCWESSCQPVVLHPIFGSPTSLGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKISSAAWERAIADSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALTNPSTLLPEPWQASSDMLSSIDADKMTVEPALLPNIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPSPSNNQGNQGGSTSATGNSQMQEWVQGAIAKISNNSDGAATATQNPMSTRTSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLASSQKNQDSAMQKIQHMMNAKTEDNSSTVRSGLGAAKVEEGHSARGGQFVLGGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSSSIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPRLKISGSINSHLSDMEVDAVSSIGIDLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVVTAVWRTGLDGDWYKCIRCLRQTCAFAHPGAPNQTNEREAWWISRWSHACPMCGGSWVKVV
Length1279
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.211
Instability index49.70
Isoelectric point6.42
Molecular weight137183.38
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09887
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.82|      18|      45|      46|      63|       1
---------------------------------------------------------------------------
   46-   63 (33.77/16.78)	G...GGQEEAEAADGG.GAEAA
   66-   87 (23.20/ 9.28)	GvlaGVAAEAMEVDGGsGAGDA
   94-  108 (28.85/13.29)	G...GG...VGAGAGG.GAQQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.38|      35|      41|    1035|    1075|       2
---------------------------------------------------------------------------
  506-  546 (62.53/27.81)	GQYMSPYDPDEGPSITGWRVQ.CWESSCQPvvlHPIfgsPTS
 1037- 1072 (58.85/42.81)	GNAGQGYTSDEVKVLFLILVDlCRRTSTLP...HPL...PAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.43|       9|      45|    1101|    1110|       3
---------------------------------------------------------------------------
 1101- 1110 (16.07/13.61)	LGPhMQNMPR
 1149- 1157 (20.36/11.21)	FGP.LDNMPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.68|      42|      44|     224|     266|       4
---------------------------------------------------------------------------
  225-  266 (77.02/41.93)	TQPTKGPVNLVRDASLWQCEHE...WRQDLSVVTKWLSGISPYRW
  269-  313 (69.66/32.52)	TNSTSSNLKTFEEKFLTQQPQSavgWPSILCVCSVFSSGSVQLHW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.72|      12|      18|       6|      18|       5
---------------------------------------------------------------------------
    6-   18 (21.59/12.66)	SPNPSPvPVPTPI
   27-   38 (27.13/12.38)	SPKDQP.PPPPPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.26|      15|      17|     859|     873|       6
---------------------------------------------------------------------------
  859-  873 (28.54/15.38)	TSPTNSSPSPSNNQG
  879-  893 (26.72/13.84)	TSATGNSQMQEWVQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.21|      43|     114|     792|     838|       7
---------------------------------------------------------------------------
  792-  837 (66.10/52.04)	SDMLSSIDADKMTVEPALLP...NI...QGyVDAV.L..DlaSHFITRLRRYASF
  902-  953 (59.11/34.82)	SDGAATATQNPMSTRTSFMPisiNTgtfPG.TPAVrLigD..CHFLHRLCQLLLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.90|      29|     383|     619|     655|       8
---------------------------------------------------------------------------
  619-  655 (40.05/43.37)	YSAHGGEvavaFLRGGVhifSGPNFDQVDSyHVNVGS
 1008- 1036 (53.85/31.44)	HSARGGQ....FVLGGA...KGPEENPIGK.SVRIGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.26|      33|     114|     343|     375|       9
---------------------------------------------------------------------------
  343-  375 (57.35/32.47)	AADAIVTE...SGALHVAGVPLVNPSTVVVWEVMPG
  435-  455 (24.21/ 9.40)	......TE...AASIHC..CPVSNFSAYVSPE....
  457-  492 (45.70/24.35)	AAQSATTTtwgSGVTSVAFDPTRGGSVITVVIVEAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.00|      24|      46|    1174|    1197|      10
---------------------------------------------------------------------------
 1174- 1197 (42.32/26.52)	DAVSSI...GID.LWPRKRRLSERDAAF
 1217- 1244 (36.68/21.98)	DVVTAVwrtGLDgDWYKCIRCLRQTCAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.90|      20|     383|     376|     401|      11
---------------------------------------------------------------------------
  376-  401 (32.85/27.70)	LGNGIQatakinAASSVPPSLNPPSW
  769-  788 (38.05/19.73)	LGKGIE......SALTNPSTLLPEPW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.02|      33|     383|     167|     207|      12
---------------------------------------------------------------------------
  167-  200 (61.60/37.53)	PPFWIPIHILNPER.PTECSV.......FNvKADSPRDFVQF
  574-  614 (50.42/25.52)	PQTYVPMPTTSDERsSSECSVdranrlsFD.PYDLPNDVRQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.23|      24|      30|     659|     682|      13
---------------------------------------------------------------------------
  659-  682 (45.49/27.59)	PPAFSSSSCCLAS.VWHDTLKDRTI
  690-  714 (36.74/20.78)	PPAILSTQTKISSaAWERAIADSVI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09887 with Med16 domain of Kingdom Viridiplantae
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