<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09886

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMTSSASPNPSPVPVPTPITTANGTTSSPKDQPPPPPPLPQQQQQQGGGQEEAEAADGGGAEAAEAGVLAGVAAEAMEVDGGSGAGDAEAGGSVGGGVGAGAGGGAQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPVNLVRDASLWQCEHEWRQDLSVVTKWLSGISPYRWLPTNSTSSNLKTFEEKFLTQQPQSAVGWPSILCVCSVFSSGSVQLHWSQWPSQNSAHSRWFSTSKGLLGAGPSGIMAADAIVTESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINAASSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEGAQTKKLTDNNETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEAGVYLLFDDFRLLLAGQYMSPYDPDEGPSITGWRVQCWESSCQPVVLHPIFGSPTSLGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKISSAAWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALTNPSTLLPEPWQASSDMLSSIDADKMTVEPALLPNIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPSPSNNQGNQGGSTSATGNSQMQEWVQGAIAKISNNSDGAATATQNPMSTRTSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLASSQKNQDSAMQKIQHMMNAKTEDNSSTVRSGLGAAKVEEGHSARGGQFVLGGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSSSIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPRLKISGSINSHLSDMEVDAVSSIGIDLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVVTAVWRTGLDGDWYKCIRCLRQTCAFAHPGAPNQTNEREAWWISRWSHACPMCGGSWVKVV
Length1287
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.215
Instability index49.13
Isoelectric point6.18
Molecular weight138301.45
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09886
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.72|      12|      20|       6|      22|       2
---------------------------------------------------------------------------
    6-   18 (21.59/15.99)	SPNPSPvPVPTPI
   27-   38 (27.13/ 7.23)	SPKDQP.PPPPPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.39|      17|      20|     855|     873|       3
---------------------------------------------------------------------------
  855-  872 (26.17/11.44)	PSSTTGtSRNMVTSPTNS
  876-  892 (31.22/11.96)	PSNNQG.NQGGSTSATGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.62|      18|      20|     271|     288|       4
---------------------------------------------------------------------------
  271-  288 (34.77/19.78)	WPSILCVCSVFSSGSVQL
  293-  310 (35.85/20.65)	WPSQNSAHSRWFSTSKGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.82|      22|      46|      46|      67|       5
---------------------------------------------------------------------------
   46-   67 (41.63/24.62)	GGGQEEAEAADGG.GA.EAAEAG..V
   70-   93 (28.45/14.25)	GVAAEAMEV.DGGsGA.GDAEAGgsV
   94-  113 (30.74/16.06)	GGG...VGAGAGG.GAqQASPAT..V
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.43|       9|      46|    1109|    1118|       6
---------------------------------------------------------------------------
 1109- 1118 (16.07/16.34)	LGPhMQNMPR
 1157- 1165 (20.36/13.44)	FGP.LDNMPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.35|      22|      31|     636|     663|       7
---------------------------------------------------------------------------
  636-  657 (42.80/29.54)	PPAFSSSSCCLAS.VWHDTLKDR
  667-  689 (34.54/12.55)	PPAILSTQTKISSaAWERAIADR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     194.84|      53|     284|     772|     827|       8
---------------------------------------------------------------------------
  548-  586 (36.89/16.77)	.............LKNPQTYVPMP..TTSDERSssecS.......VDrANRLSFDPYDLPN.......
  772-  827 (88.11/62.34)	LLLDMLGKGIESALTNPSTLLPEPWQASSDMLS....S.......ID.ADKMTVEPALLPNIqgyVDA
 1073- 1107 (30.88/13.36)	....................LPHPLPASQVGSS....SiiirlhyID.GN.YTV....LPEV...VEA
 1127- 1156 (38.96/18.24)	LLLRELELQPPAEEWHRRNMFGGPWSEPDD......................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     115|     834|     846|       9
---------------------------------------------------------------------------
  834-  846 (26.05/17.68)	HFITRLRRYASFC
  950-  962 (26.85/18.44)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.70|      34|      41|     179|     219|      10
---------------------------------------------------------------------------
  146-  186 (48.82/29.54)	FWIPIHILNpeRPTECSVfNVKADSprDFVQ.fiEWSPR...SCP
  194-  224 (43.14/18.05)	FHGRITIWT..QPTKGPV.NLVRDA..SLWQcehEW.........
  518-  543 (38.74/12.74)	FGSPTSLGG..QP...PM.QT........V.....WSTRvnkSIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.31|      16|     115|     605|     622|      12
---------------------------------------------------------------------------
  605-  622 (26.03/24.65)	VAFLRGGVHifSGPNFDQ
  722-  737 (30.27/20.35)	IAFLDADFH..SLPTMQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.00|      24|      45|    1182|    1205|      13
---------------------------------------------------------------------------
 1182- 1205 (42.32/25.06)	DAVSSI...GID.LWPRKRRLSERDAAF
 1225- 1252 (36.68/20.77)	DVVTAVwrtGLDgDWYKCIRCLRQTCAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.73|      17|     537|     483|     507|      18
---------------------------------------------------------------------------
  452-  468 (29.17/16.75)	FDPTRGGSVI..TVVIVEA
  489-  507 (29.56/17.65)	YDPDEGPSITgwRVQCWES
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09886 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLASSQKNQDSAMQKIQHMMNAKTEDNSSTVRSGLGAAK
2) MTSSASPNPSPVPVPTPITTANGTTSSPKDQPPPPPPLPQQQQQQGGGQEEAEAADGGGAEAAEAGVLAGVAAEAMEVDGGSGAGDAEAGGSVGGGVGAGAGGGAQQASPATVFRIR
3) SSTTGTSRNMVTSPTNSSPSPSNNQGNQGGSTSATGNSQ
973
1
856
1011
117
894










Molecular Recognition Features






MoRF SequenceStartStop




1) FRIRLK
114
119