<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09885

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMTSSASPNPSPVPVPTPITTANGTTSSPKDGGGAEAAEAGVLAGVAAEAMEVDGGSGAGDAEAGGSVGGGVGAGAGGGAQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPVNLVRDASLWQCEHEWRQDLSVVTKWLSGISPYRWLPTNSTSSNLKTFEEKFLTQQPQSAVGWPSILCVCSVFSSGSVQLHWSQWPSQNSAHSRWFSTSKGLLGAGPSGIMAADAIVTESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINAASSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEGAQTKKLTDNNETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSCQPVVLHPIFGSPTSLGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKISSAAWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALTNPSTLLPEPWQASSDMLSSIDADKMTVEPALLPNIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPSPSNNQGNQGGSTSATGNSQMQEWVQGAIAKISNNSDGAATATQNPMSTRTSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLASSQKNQDSAMQKIQHMMNAKTEDNSSTVRSGLGAAKVEEGHSARGGQFVLGGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSSSIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPRLKISGSINSHLSDMEVDAVSSIGIDLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVVTAVWRTGLDGDWYKCIRCLRQTCAFAHPGAPNQTNEREAWWISRWSHACPMCGGSWVKVV
Length1269
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy-0.186
Instability index47.69
Isoelectric point6.56
Molecular weight136206.34
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09885
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.90|      30|      44|     425|     454|       1
---------------------------------------------------------------------------
  425-  454 (53.07/23.48)	YVSPEAAAQSATTT.....TWGSGVTSVAFDPTRG
  467-  501 (54.83/24.47)	YMSPYDPDEGPSITgwrvqCWESSCQPVVLHPIFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.68|      42|      44|     198|     240|       2
---------------------------------------------------------------------------
  199-  240 (77.02/40.29)	TQPTKGPVNLVRDASLWQCEHE...WRQDLSVVTKWLSGISPYRW
  243-  287 (69.66/31.23)	TNSTSSNLKTFEEKFLTQQPQSavgWPSILCVCSVFSSGSVQLHW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.26|      15|      17|     849|     863|       3
---------------------------------------------------------------------------
  849-  863 (28.54/15.93)	TSPTNSSPSPSNNQG
  869-  883 (26.72/14.34)	TSATGNSQMQEWVQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.40|      43|     112|     782|     828|       4
---------------------------------------------------------------------------
  782-  827 (65.50/46.29)	SDMLSSIDADKMTVEPALLP...NI...QGyVDAVL...DlaSHFITRLRRYASF
  892-  943 (62.90/33.91)	SDGAATATQNPMSTRTSFMPisiNTgtfPG.TPAVRligD..CHFLHRLCQLLLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.02|      40|      44|    1148|    1187|       5
---------------------------------------------------------------------------
 1148- 1187 (68.83/45.04)	LKISGSINSHLSDM..EVDAVSSI...GID.LWPRKRRLSERDAAF
 1189- 1234 (59.19/37.65)	LKTSVGLGGYLGVMgsRRDVVTAVwrtGLDgDWYKCIRCLRQTCAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.47|      11|      22|      30|      40|       6
---------------------------------------------------------------------------
   30-   40 (22.53/12.70)	DGG.GAEAAEAG
   53-   64 (18.93/ 9.33)	DGGsGAGDAEAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.43|       9|      46|    1091|    1100|       7
---------------------------------------------------------------------------
 1091- 1100 (16.07/13.37)	LGPhMQNMPR
 1139- 1147 (20.36/11.02)	FGP.LDNMPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.67|      15|     112|     587|     604|       9
---------------------------------------------------------------------------
  587-  602 (22.72/20.62)	VAFLRGGVHIfSGPNF
  607-  621 (26.95/11.07)	SYHVNVGSAI.APPAF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09885 with Med16 domain of Kingdom Viridiplantae
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