<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09880

Description Mediator of RNA polymerase II transcription subunit 15a
SequenceMSQQQTRQPNASTSVQGSLPSVGQNLSSVSQTLTLQNLSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQFMYQQQKLLMNQKLQQNSRMQPHIQQQQTLLQSTQMQSSQQPMVQMSSGLQPGQIAIPQTQSMAMQSATQSGIQQNALNSVQQPVQSLLQQPTPSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQPQQLMGHQSNLQQNQLVNQQSGAVEMQQQQRLPVQSTNLLNMHQTQQMMNQQSMPLHQPQQLANQGNVSSLNQQQQQLLGTVPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQFQSQPNQTQQQLGMQQRLQTSAGMLLQQNNIDQQKQYVQAQKVLQEAPSTSVDSTAQTGHPGTGDSQEELYQMVRHATIPLALSLLAHFHLYR
Length433
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.02
Grand average of hydropathy-1.003
Instability index88.82
Isoelectric point10.15
Molecular weight48892.12
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09880
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     423.41|      79|      79|       1|      79|       4
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    1-   54 (71.51/10.30)	...........................MSQ....................................QQTRQPNAST.....SVQGSL.PS......VGQN..LSSVSQTL..........................TLQN.LSGMP.QNTMNNGLAQGT
   55-  134 (123.46/26.02)	PQDMYAAQRQMAGRQQQQQQQQAHNqfMYQ....................................QQKLLMNQKL.....QQNSRMqPH......IQQQ...QTLLQST..........................QMQS..SQQP.MVQMSSGLQPGQ
  138-  252 (82.50/13.63)	PQTQSMA...MQSATQSGIQQNALN.....svqqpvqsllqqptpsvvrqqqhpqsmhqqsslqqtQPTQQPNIPLqqqpqQLMGHQ.SN......LQQNqlVNQQSGAV..........................EMQQ.QQRLPvQST.N.LLNMHQ
  253-  344 (86.64/14.88)	TQQMM.NQQSMPLHQPQQLANQGNVssLNQ....................................QQQQ............LLGTV.PN......VRMH..M......LqqqkpiqqpqqqqhaqqtsmglmqpqSQQN.QLQQP.QQHMMSQF.QSQ
  345-  400 (59.29/ 6.60)	PNQ...TQQQL.GMQQRLQ.......................................................................tsagmlLQQN.nIDQQKQYV..........................QAQKvLQEAP.STSVDSTAQTGH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09880 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KVLQEAPSTSVDSTAQTGHPGTGDSQEELYQM
2) MSQQQTRQPNASTSVQGSLPSVGQNLSSVSQTLTLQNLSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQFMYQQQKLLMNQKLQQNSRMQPHIQQQQTLLQSTQMQSSQQPMVQMSSGLQPGQIAIPQTQSMAMQSATQSGIQQNALNSVQQPVQSLLQQPTPSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQPQQLMGHQSNLQQNQLVNQQSGAVEMQQQQRLPVQSTNLLNMHQTQQMMNQQSMPLHQPQQLANQGNVSSLNQQQQQLLGTVPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQFQSQPNQTQQQLGMQQRLQTSAGMLL
382
1
413
366










Molecular Recognition Features






MoRF SequenceStartStop




NANANA