<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09874

Description Mediator of RNA polymerase II transcription subunit 15a
SequenceMSQQQTRQPNASTSVQGSLPSVGQNLSSVSQTLTLQNLSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQFMYQQQKLLMNQKLQQNSRMQPHIQQQQTLLQSTQMQSSQQPMVQMSSGLQPGQIAIPQTQSMAMQSATQSGIQQNALNSVQQPVQSLLQQPTPSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQPQQLMGHQSNLQQNQLVNQQSGAVEMQQQQRLPVQSTNLLNMHQTQQMMNQQSMPLHQPQQLANQGNVSSLNQQQQQLLGTVPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQFQSQPNQTQQQLGMQQRLQTSAGMLLQQNNIDQQKQYVQAQKVLQEAPSTSVDSTAQTGHPGTGDSQEELYQMIKSLKDQYFAELNDVYNKISMKIQNIDNHMPAQKSAEQYERLKGFKGMLERILHFLQANKSSIQPGFREKISIFERQILSIMSSQRRKPVQAPGQQTFQQSGGQAPSSNMSQQHQTSQGLQQHDSHTNQMPQASLPSMNTGVPTSGAPGIQHVPAPQASNFGVPTTQQNVTNAPQAASNPENAQGNNFNPVQHGSMGTALQQGSTGPMQGALNAQHQSNSNMISNNAMSTMQTNTNAMQANVNSLQQLKQHQEHQMMQNQQMKQRQQMLQQMQQKKILQQQLPIQQLQKQQQQGPIQVQQLHSGNDVNELKVRQGAAIKSGMYQPLNQRNYYQQIKRGDVFPISSPQNLQASSPQISHYSHVDQHSLLQSQVKTGTPLHSANSPFVPSPSPPVAPSPVPLDSDKPLSNLSSLTSAGQAGHQQTSLAPLTQSIAVNTPGISASPLLAEFTSADGGQVSVPTQVPTKSSAAERPLDRLLKAHKSVSMVSSRSTS
Length905
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.03
Grand average of hydropathy-0.905
Instability index74.28
Isoelectric point9.93
Molecular weight100249.82
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09874
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     459.14|      63|      63|     547|     609|       3
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   53-  113 (60.83/ 9.41)	.GTP.........QdmyaaqrQMAGRQQ..QQQQQQA.....HNQFM....................YQQ.QKL.LMNQKlQQNSR..MQ..PH.............IQQQQT.......L..LQ....S...
  114-  166 (72.96/13.13)	TQMQ.........S.......SQQPMVQ..MSSGLQP.....GQIAI....................PQT.QSM....AM.Q.SAT..QSGIQQ......NAL..NSVQ...............Q....PV.Q
  195-  268 (54.79/ 7.56)	TQ.P.........T.......QQ.PNIP..LQQQPQQlmghqSN..........................lQQNqLVNQQ.SGAVE..MQQQQRlpvqstNLL..NMHQTQQM...mnqqS..MPlhqpQ...
  504-  552 (59.55/ 9.02)	......................QAPGQQtfQQSGGQA.....PSSNM....................S...QQH.......Q..TS..QGLQQH......DSHtnQMPQA..........S..LP....SM.N
  553-  617 (83.78/16.44)	TGVP.........T.......SGAPGIQ..HVPAPQA.....SNFGV....................PTT.QQN.VTNAP.QAASN..PENAQG......NNF..NPVQHGSMgtalqqgS............
  618-  687 (74.61/13.63)	TG.P.........M.......QGALNAQ..HQSNSNM....iSNNAM....................STM.QTN..TNAM.QANVNslQQLKQH......QEH..QMMQNQQM....kqrQqmLQ....QMqQ
  787-  872 (52.63/ 6.90)	TGTPlhsanspfvP.......SPSPPVA..PSPVPLD.....SDKPLsnlssltsagqaghqqtslaPLT.QSI.AVNTP.GISAS..PLLAE.........F..TSADGGQV.......S..VP........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.02|      17|      25|     446|     470|       4
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  446-  466 (25.12/36.21)	QKSAEQyerlKGFK...GMLER.IL
  472-  492 (21.89/ 7.80)	NKSSIQ....PGFRekiSIFERqIL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.26|      23|      25|     337|     359|       5
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  295-  318 (35.53/ 9.46)	MHMLQQQKPiQQPQQQQHAQQTSM
  337-  359 (42.51/13.30)	MMSQFQSQP.NQTQQQLGMQQRLQ
  364-  385 (30.22/ 6.54)	MLLQ.QNNI.DQQKQYVQAQKVLQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.75|      15|      15|     732|     746|       7
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  732-  746 (26.84/14.22)	KSGMYQPLNQRNYYQ
  749-  763 (24.14/11.92)	KRGDVFPISSPQNLQ
  768-  782 (23.77/11.61)	QISHYSHVDQHSLLQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.22|      17|      27|       2|      19|       8
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    2-   19 (24.51/15.50)	SQQQTRQpNASTSVQGSL
   30-   46 (30.70/14.84)	SQTLTLQ.NLSGMPQNTM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.89|      13|     431|     391|     403|       9
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  391-  403 (24.37/13.88)	SVDSTAQTGHPGT
  824-  836 (23.52/13.08)	SLTSAGQAGHQQT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09874 with Med15 domain of Kingdom Viridiplantae
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