<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09872

Description Mediator of RNA polymerase II transcription subunit 15a
SequenceMSQQQTRQPNASTSVQGSLPSVGQNLSSVSQTLTLQNLSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQFMYQQQKLLMNQKLQQNSRMQPHIQQQQTLLQSTQMQSSQQPMVQMSSGLQPGQIAIPQTQSMAMQSATQSGIQQNALNSVQQPVQSLLQQPTPSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQPQQLMGHQSNLQQNQLVNQQSGAVEMQQQQRLPVQSTNLLNMHQTQQMMNQQSMPLHQPQQLANQGNVSSLNQQQQQLLGTVPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQFQSQPNQTQQQLGMQQRLQTSAGMLLQQNNIDQQKQYVQAQKVLQEAPSTSVDSTAQTGHPGTGDSQEELYQMIKSLKDQYFAELNDVYNKISMKIQNIDNHMPAQKSAEQYERLKGFKGMLERILHFLQANKSSIQPGFREKISIFERQILSIMSSQRRKPVQAPGQQTFQQSGGQAPSSNMSQQHQTSQGLQQHDSHTNQMPQASLPSMNTGVPTSGAPGIQHVPAPQASNFGVPTTQQNVTNAPQAASNPENAQGNNFNPVQHGSMGTALQQGSTGPMQGALNAQHQSNSNMISNNAMSTMQTNTNAMQANVNSLQQLKQHQEHQMMQNQQMKQRQQMLQQMQQKKILQQQLPIQQLQKQQQQGPIQVQQLHSGNDVNELKVRQGAAIKSGMYQPLNQRNYYQQIKRGDVFPISSPQNLQASSPQISHYSHVDQHSLLQSQVKTGTPLHSANSPFVPSPSPPVAPSPVPLDSDKPLSNLSSLTSAGQAGHQQTSLAPLTQSIAVNTPGISASPLLAEFTSADGGQVSVPTQVPTKSSAAERPLDRLLKADCWISAW
Length899
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.03
Grand average of hydropathy-0.901
Instability index73.79
Isoelectric point9.77
Molecular weight99737.26
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09872
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     471.47|      63|      63|     547|     609|       3
---------------------------------------------------------------------------
   67-  122 (74.92/14.41)	GRQQQQ.QQQQ.AHNQF.MYQQ.....Q..KLLMN..QKLQQNSRM.QP..hIQQQQT.......L..L............................QS........TQMQSSQQP
  123-  209 (63.02/10.65)	MVQMSS.GLQP.GQIAIPQTQSM...AM..Q.SAT..QSGIQQNAL.NS...VQQ.PV......qS..LlqqptpsvvrqqqhpqsmhqqsslqqtqPTQ......QPNIPLQQQP
  335-  401 (51.07/ 6.86)	..QHMM.SQFQ.SQ..PNQTQQQLGMQQrlQTSAG..MLLQQNNID.QQkqyVQAQKV.......LqeA............................PSTsvdstaQTGHP.....
  507-  561 (78.82/15.64)	G.QQT...FQQ.SGGQAP..SSN..MSQ..QHQTS..QGLQQHDSHtNQ...MPQ.........aS..L............................PSM......NTGVPTSGAP
  562-  625 (85.37/17.72)	GIQHVP.APQA.SNFGVPTTQQNVTNAP..QAASN..PENAQGNNF.NP...VQHGSMgtalqqgS.........................................TG.PMQGAL
  626-  696 (65.79/11.52)	NAQHQS.NSNMiSNNAMSTMQTN.TNAM..QANVNslQQLKQHQEH.QM...MQNQQM....kqrQqmL............................QQM.....qQKKILQQQLP
  832-  877 (52.48/ 7.31)	GHQQTSlA.........PLTQSIAVNTP..GISAS..PLLAE...F.TS...ADGGQV.......S..V............................P.........TQVPT....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.93|      22|      25|     457|     478|       4
---------------------------------------------------------------------------
  291-  306 (30.62/16.85)	PNVR..........MHML..QQQKPIQQ
  457-  477 (32.48/18.42)	.GFK...GMLER.ILHFL..QANKSSIQ
  478-  504 (24.82/11.98)	PGFRekiSIFERqILSIMssQRRKP.VQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     167.11|      25|      25|     217|     241|       5
---------------------------------------------------------------------------
  217-  241 (41.98/14.77)	SNL....QQNQLVNQQSGAVEMQQQQRLP
  245-  271 (34.18/10.42)	TNLlnmhQTQQMMNQQS..MPLHQPQQLA
  698-  715 (27.04/ 6.44)	.......QQLQ.KQQQQG..PI.QVQQLH
  716-  740 (32.29/ 9.37)	SGN....DVNELKVRQGAAIKSGMYQPLN
  742-  763 (31.61/ 8.99)	RNY....Y.QQI..KRGDVFPISSPQNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.22|      17|      25|       2|      19|       7
---------------------------------------------------------------------------
    2-   19 (24.51/14.04)	SQQQTRQpNASTSVQGSL
   30-   46 (30.70/13.44)	SQTLTLQ.NLSGMPQNTM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09872 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSQQQTRQPNASTSVQGSLPSVGQNLSSVSQTLTLQNLSGMPQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQFMYQQQKLLMNQKLQQNSRMQPHIQQQQTLLQSTQMQSSQQPMVQMSSGLQPGQIAIPQTQSMAMQSATQSGIQQNALNSVQQPVQSLLQQPTPSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQPQQLMGHQSNLQQNQLVNQQSGAVEMQQQQRLPVQSTNLLNMHQTQQMMNQQSMPLHQPQQLANQGNVSSLNQQQQQLLGTVPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQFQSQPNQTQQQLGMQQRLQTSAGMLL
2) MSSQRRKPVQAPGQQTFQQSGGQAPSSNMSQQHQTSQGLQQHDSHTNQMPQASLPSMNTGVPTSGAPGIQHVPAPQASNFGVPTTQQNVTNAPQAASNPENAQGNNFNPVQHGSMGTALQQGSTGPMQGALNAQHQSNSNMISNNAMSTMQTNTNAMQANVNSLQQLKQHQEHQMMQNQQMKQRQQMLQQMQQK
3) PISSPQNLQASSPQISHYSHVDQHSLLQSQVKTGTPLHSANSPFVPSPSPPVAPSPVPLDSDKPLSNLSSLTSAGQAGHQQTSLAPLTQSI
4) QQQLPIQQLQKQQQQGPIQVQQLHSGNDVNELKVRQGAAIKSGMY
1
495
755
692
366
688
845
736










Molecular Recognition Features






MoRF SequenceStartStop




NANANA