<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09859

Description Putative mediator of RNA polymerase II transcription subunit 19b
SequenceMGMSTEGNPYFVLDDTEEREMWAQHRAMTRCHQVMLRRVNEQLVRPRELTGAVDLISHYKLLPHHDFFCKKPLPLAISDTHYLHNVVGDTEIRKGEGMELDQLVHNAYLRDKPAYIQPFDMETLGQAFQLRETALVDLPSTEKGIPTISGKPKSESKDKEKKHKRHKDKDKEHKKHKHRHKDRSKDKDKDKDKDKKKDKSGHHEKKRKHEGTEDSVDVHKHKKSKVAHCYYFLADTIAFIEKICLFVFNMDGQLTAAQELQNR
Length263
PositionHead
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-1.087
Instability index39.55
Isoelectric point9.09
Molecular weight30806.79
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09859
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.38|      15|      15|     157|     171|       1
---------------------------------------------------------------------------
  151-  168 (23.35/ 8.27)	KPKsesKDKEKKHKRHKD
  169-  186 (22.03/ 7.43)	KDKehkKHKHRHKDRSKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.07|      15|      15|     194|     208|       2
---------------------------------------------------------------------------
  194-  208 (25.88/12.58)	DKKKDKSG.HHEKKRK
  210-  225 (21.19/ 9.09)	EGTEDSVDvHKHKKSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09859 with Med19 domain of Kingdom Viridiplantae
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