<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09855

Description ATP-dependent DNA helicase
SequenceMEDEENIEGELLLVESQLHDIQGQIKTLLDRQEELYERQAQLKALLEASKLTRNTTINTSSVAPEDWSGSFPWDLEADDTRFNIFGISSYRSNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLSALGIPAYMLTSTTNKEVEKFIYKTLDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSVPMIALTATATSKVQMDLMEMLHIPRCIKFVSTVNRPNLFYKVSEKSPVGKVVIDEITKFISESYPNNESGIIYCFSRKECEQVAKELRERGISADYYHADMDIVNREKIHMRWSKGKSQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPRQSSMVFYENCGLQNLYDIVRYCQSKRSCRHGAFFRHFGEVPQDCNGMCDNCASTIEQKDIDVTCMIYFASV
Length495
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.08
Grand average of hydropathy-0.260
Instability index43.80
Isoelectric point6.22
Molecular weight56031.71
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
DNA helicase activity	GO:0003678	IEA:UniProtKB-EC
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09855
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     411.94|     111|     227|      85|     205|       1
---------------------------------------------------------------------------
   67-  193 (167.69/146.33)	WSGSFPWDLE..addtrfniFGIS.SYR.SNQREIInAVMSGRDvlvimaaGGGKSLCYQLPAVLRD.GIA.................LVVSPLLSLIQD.....QVMGLSALGI....P..AYM.LTSTTNKEVEKFIYKTLDKGEGELK...ILYVTPEKIS
  194-  300 (123.46/95.52)	KSKRFMSKLEkchhagrlslIAID.EAHcCSQW..................GHDFRPDYKNLGILK...IQ.................FPSVPMIALTATatskvQMDLMEMLHI....P..RCIkFVSTVNR..PNLFYKVSEKSPVG.K...VV......ID
  301-  423 (120.79/88.81)	EITKFIS.................eSYP.NNESGII.YCFSRKE.............CEQVAKELRErGISadyyhadmdivnrekihMRWSKGKSQV........IVGTVAFGMginkPdvRFV.IHHSLSKSMETYYQESGRAGRDGLPsecILYYRPGDVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.38|      14|      15|      17|      30|       2
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   17-   30 (24.49/19.24)	QLHDIQGQIKTLLD
   34-   47 (22.89/17.51)	ELYERQAQLKALLE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09855 with Med34 domain of Kingdom Viridiplantae
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