<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09834

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGRHLSVISAIRIIKEMTKTMQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVAAILQEESDMLGAEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYEAGVGNSSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKGSRLSGPLIDALVASPASSVAELDKLYSIALNGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSATSTPGSMSNYLAHMSTLNEILLGVSYGDAIHILSLYGMVPDVAVALMPICEAFGSIPPPPNHKSTILGEISVYTVFSCAFLCLLRLWKFYRPPQEYCLAGRGGSVKLELTLDYLLLMHNNHIEFSNSSASNRDSCNDMGSVNEVPAQLIYIDSFPKLRAWYFQNQACIASPLSGLCNKNPVHQVANKILNMICRKMNKGVVSSSTLSSTSSSSVSGSSVSASDDPCQRPAVSGWEFLEAVPFVLEAVLTACAHGQLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIQSCFSSFLQSSSSGSDIIANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWCFNGPPQLKSGRTPLSCAASMVQQVALLGGGLLCIAGGPLVVQVLYEETLPTLLLSARDQSLKGPGPVSSTLQGYAMANMLFYCGSLLWGADRTSPVMKLSFLSRRPRVVRTHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLRDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length1009
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.224
Instability index49.59
Isoelectric point7.00
Molecular weight108974.21
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09834
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.96|      16|     101|     824|     841|       1
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  101-  116 (27.47/13.06)	PLSVAAILQEESDMLG
  826-  841 (28.49/13.99)	PLSCAASMVQQVALLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.97|      16|     101|     123|     144|       3
---------------------------------------------------------------------------
  123-  139 (23.98/29.18)	LPQRQgLISSLQDLIQY
  570-  585 (26.99/11.94)	LSSRD.LTTSLRDLVDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.63|      14|     340|     170|     183|       6
---------------------------------------------------------------------------
  170-  183 (26.46/14.49)	GVGNSSMMDQTDSS
  513-  526 (23.17/11.88)	GVVSSSTLSSTSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.77|      22|      76|     598|     619|       8
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  598-  619 (44.84/31.44)	SAEITRGIWKPVPMN...GIEWPS.P
  672-  697 (31.93/19.90)	SLEYIQGVIGQALENcagGSSWPSmP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.03|      60|     920|       5|      77|      13
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    5-   77 (83.95/82.10)	GSLLGQLTGAGRPACWiifDIYVENAIDGRHLSVISAIRIIK.....EMTKTMQvlneaSWQEtfKALwisALRLVQR
  931-  995 (103.08/63.57)	GVLDGHILLGCDPGTW...KAYVSQFMFLVVKFVPSWLRDIKldtlkKIAAGLR.....SWHE..HDL...ALSLLER
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.82|      20|     434|     411|     430|      15
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  411-  430 (35.54/23.61)	CLAGRGGSVKL..ELTLDYLLL
  846-  867 (31.28/19.81)	CIAGGPLVVQVlyEETLPTLLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09834 with Med33 domain of Kingdom Viridiplantae
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