<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09830

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMAAVKASEARGDPPLLQVVELSRIVAVEGAGTLSSADLARILVSNLCFAHNSPSLWKLLGQAVVSRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHVTSSLLSMEAGPNRDKIGKSIAEALQLSKVYGFSGTEFGHVVIMFVLAVVSKLIDSIFEDCGFPSAMVEGQESVNAIDGPQPMDLDVKMGSTENQNEHREQLRRKNTLIALDVLHMMTADRKIQSFLRLIFLNMPERFSSLRQRLSSIEAQKVSLETLLPSGHKINELLINFWRVCKTDYQPNNKHILGVLGNMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGRHLSVISAIRIIKEMTKTMQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVAAILQEESDMLGAEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYEAGVGNSSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKGSRLSGPLIDALVASPASSVAELDKLYSIALNGSEEEKTAAAKILCGASLVRGWNIQVPDVAVALMPICEAFGSIPPPPNHKSTILGEISVYTVFSCAFLCLLRLWKFYRPPQEYCLAGRGGSVKLELTLDYLLLMHNNHIEFSNSSASNRDSCNDMGSVNEVPAQLIYIDSFPKLRAWYFQNQACIASPLSGLCNKNPVHQVANKILNMICRKMNKGVVSSSTLSSTSSSSVSGSSVSASDDPCQRPAVSGWEFLEAVPFVLEAVLTACAHGQLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIQSCFSSFLQSSSSGSDIIANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWCFNGPPQLKSGRTPLSCAASMVQQVALLGGGLLCIAGGPLVVQVLYEETLPTLLLSARDQSLKGPGPVSSTLQGYAMANMLFYCGSLLWGADRTSPVMKLSFLSRRPRVVRTHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLRDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length1246
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.170
Instability index47.88
Isoelectric point8.11
Molecular weight135613.04
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09830
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     261.81|     117|     340|     649|     823|       1
---------------------------------------------------------------------------
   34-  123 (105.02/40.20)	...................................................................................................................SSADLARI..LVSNLCFAHNSPSL..WKLLGQAVVSrllCPLHVLALLTPrvlPQRRAQPEAYRLYLELLKCHVTSSLLSMEAGPNRDkiGKSI
  572-  607 (18.43/135.50)	AAAKILCGASLVRGWNI..QVPDVAVALMPICeAFGSI...........................................................................................................................................................................
  685-  770 (116.18/16.45)	......................................ppppnhkstilgeisvytvfscaflcllrlwkfyrppqeyclagrggsvkleltldylllmhnnhiefsnssasnrdSCNDMGSVneVPAQLIYIDSFPKLraWYFQNQACIA...SPLSGLCNKNP...VHQVANKILNMICRKMNKGVVSSSTLSSTSSSSVS..GSSV
  771-  807 (22.18/ 0.00)	SASDDPCQRPAVSGWEFleAVPFVLEAVLTAC.AHGQL...........................................................................................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.42|      44|     139|     976|    1024|       4
---------------------------------------------------------------------------
  241-  280 (54.48/27.93)	SSLRQRLSS...IEAQKvSLETLLpsGHKI.NELL.......INFWRVCKT
  414-  440 (23.98/ 7.94)	.........GNKILPQRqGLISSL..QDLIQYSGLLVP.............
  976- 1023 (71.96/50.48)	SSFLQSSSSGSDIIANR.GVGALL..GDSITNQGLRLPmapgFIYLRTCRT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09830 with Med33 domain of Kingdom Viridiplantae
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