<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09829

Description Mediator of RNA polymerase II transcription subunit 33A
SequenceMFVLAVVSKLIDSIFEDCGFPSAMVEGQESVNAIDGPQPMDLDVKMGSTENQNEHREQLRRKNTLIALDVLHMMTADRKIQSFLRLIFLNMPERFSSLRQRLSSIEAQKVSLETLLPSGHKINELLINFWRVCKTDYQPNNKHILGVLGNMGSGGSLLGQLTGAGRPACWIIFDIYVENAIDGRHLSVISAIRIIKEMTKTMQVLNEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVAAILQEESDMLGAEGNKILPQRQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYEAGVGNSSMMDQTDSSMKAAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKGSRLSGPLIDALVASPASSVAELDKLYSIALNGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSASLPSDSATSTPGSMSNYLAHMSTLNEILLGVSYGDAIHILSLYGMVPDVAVALMPICEAFGSIPPPPNHKSTILGEISVYTVFSCAFLCLLRLWKFYRPPQEYCLAGRGGSVKLELTLDYLLLMHNNHIEFSNSSASNRDSCNDMGSVNEVPAQLIYIDSFPKLRAWYFQNQACIASPLSGLCNKNPVHQVANKILNMICRKMNKGVVSSSTLSSTSSSSVSGSSVSASDDPCQRPAVSGWEFLEAVPFVLEAVLTACAHGQLSSRDLTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKPVPMNGIEWPSPGASLHSIEAEVKEILASAGVQINSCYPRGVPPMLPLPMAALVSLTITFKLDRSLEYIQGVIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRDKDAVAQLIQSCFSSFLQSSSSGSDIIANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRTFHDTYFVSEVILKQVIEWAHKLANGWCFNGPPQLKSGRTPLSCAASMVQQVALLGGGLLCIAGGPLVVQVLYEETLPTLLLSARDQSLKGPGPVSSTLQGYAMANMLFYCGSLLWGADRTSPVMKLSFLSRRPRVVRTHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLRDIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL
Length1159
PositionTail
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.07
Grand average of hydropathy0.169
Instability index49.66
Isoelectric point6.90
Molecular weight126067.82
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09829
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.42|      44|     140|     889|     937|       3
---------------------------------------------------------------------------
   96-  135 (54.48/24.57)	SSLRQRLSS...IEAQKvSLETLLpsGHKI.NELL.......INFWRVCKT
  269-  295 (23.98/ 6.87)	.........GNKILPQRqGLISSL..QDLIQYSGLLVP.............
  889-  936 (71.96/44.53)	SSFLQSSSSGSDIIANR.GVGALL..GDSITNQGLRLPmapgFIYLRTCRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     411.39|     155|     340|     320|     517|       4
---------------------------------------------------------------------------
  325-  488 (248.26/199.85)	SMMDQTDSSMKAAGNMLHLIIEACISRKLIdtsaYLWPGYVVP........SGTLK.....DTALPQESPWLNFMKGS...RLSGPLIDALVASPAS......................................................SVAELDKLYSIALNGSeeeKTAAAKILCGASLVRGWNIQEHVVGMVVKLLSA....SLPS.DSATS.......TPGSMSNYLAHMSTlnEILLGV
  519-  611 (85.68/32.55)	SIPPPPNHKSTILGEISVYTVFSCAFLCLL....RLWKFYRPPqeyclagrGGSVKleltlDYLLLMHNNHIEFSNSSasnRDSCNDMGSVNEVPAQ.....................................................................................................................................................
  666-  755 (77.45/27.79)	.................................................................................................liyidsfpklrawyfqnqaciasplsglcnknpvhqvankilnmicrkmnkgvvSSSTLSSTSSSSVSGS...SVSASDDPCQRPAVSGWEFLEAVPFVLEAVLTAcahgQLSSrDLTTSlrdlvdfLPASLAAIVSYFSA..EITRGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.70|      33|     336|     615|     649|       8
---------------------------------------------------------------------------
  615-  649 (59.64/42.77)	IDSFPKL.RAWYFQNQACIAS...PLSglCNKNPVHQVA
  952-  988 (56.06/33.80)	IEWAHKLaNGWCFNGPPQLKSgrtPLS..CAASMVQQVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.03|      60|     920|     155|     227|       9
---------------------------------------------------------------------------
  155-  227 (83.95/94.01)	GSLLGQLTGAGRPACWiifDIYVENAIDGRHLSVISAIRIIK.....EMTKTMQvlneaSWQEtfKALwisALRLVQR
 1081- 1145 (103.08/72.86)	GVLDGHILLGCDPGTW...KAYVSQFMFLVVKFVPSWLRDIKldtlkKIAAGLR.....SWHE..HDL...ALSLLER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09829 with Med33 domain of Kingdom Viridiplantae
Unable to open file!